Wall clock time and date at job start Mon Mar 30 2020 01:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46817 * 2 1 4 4 C 1.50697 * 109.47466 * 300.00004 * 3 2 1 5 5 H 1.08006 * 119.99920 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00428 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00033 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 3 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46872 * 299.99975 * 8 6 4 12 12 C 1.53006 * 109.46977 * 240.00269 * 2 1 3 13 13 C 1.52997 * 109.47127 * 299.99541 * 12 2 1 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 2 15 15 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 16 16 C 1.52997 * 109.47415 * 120.00127 * 2 1 3 17 17 H 1.09002 * 109.47045 * 300.00068 * 16 2 1 18 18 O 1.42896 * 109.47412 * 180.02562 * 16 2 1 19 19 H 1.08992 * 109.47063 * 299.99823 * 1 2 3 20 20 H 1.08996 * 109.47407 * 60.00219 * 1 2 3 21 21 H 1.09004 * 109.46733 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47153 * 60.00231 * 3 2 1 23 23 H 1.09001 * 109.47289 * 180.02562 * 3 2 1 24 24 H 0.96996 * 120.00887 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.46505 * 179.97438 * 12 2 1 26 26 H 1.08996 * 109.46884 * 60.00293 * 12 2 1 27 27 H 1.09002 * 109.47153 * 180.02562 * 13 12 2 28 28 H 1.09001 * 109.46832 * 60.00321 * 13 12 2 29 29 H 1.09004 * 109.46724 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 31 31 H 1.08992 * 109.47554 * 59.99639 * 15 14 13 32 32 H 1.09004 * 109.47108 * 179.97438 * 15 14 13 33 33 H 0.96699 * 114.00604 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5376 2.1529 -1.2304 5 1 0.9164 1.6282 -1.9412 6 6 1.8702 3.4731 -1.4483 7 7 2.6262 4.1123 -0.5827 8 14 1.2469 4.3539 -2.9732 9 1 -0.2380 4.3534 -2.9729 10 1 1.7419 5.7539 -2.9732 11 1 1.7419 3.6543 -4.1860 12 6 2.0400 -0.7212 -1.2493 13 6 1.5301 -2.1637 -1.2493 14 6 2.0401 -2.8849 -0.0001 15 6 1.5301 -2.1638 1.2491 16 6 2.0401 -0.7212 1.2492 17 1 1.6768 -0.2074 2.1392 18 8 3.4690 -0.7207 1.2495 19 1 -0.3633 0.5138 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6766 1.9563 0.8900 23 1 3.1299 1.4426 -0.0005 24 1 2.8606 5.0410 -0.7361 25 1 3.1300 -0.7208 -1.2495 26 1 1.6767 -0.2073 -2.1392 27 1 1.8938 -2.6777 -2.1391 28 1 0.4401 -2.1637 -1.2493 29 1 1.6772 -3.9128 -0.0004 30 1 3.1301 -2.8849 -0.0001 31 1 0.4402 -2.1638 1.2492 32 1 1.8931 -2.6779 2.1392 33 1 3.8625 -1.1627 2.0143 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238472212.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:50 Heat of formation + Delta-G solvation = -102.898029 kcal Electronic energy + Delta-G solvation = -13610.389974 eV Core-core repulsion = 11440.859923 eV Total energy + Delta-G solvation = -2169.530051 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.71124 -36.40019 -35.25304 -33.42510 -30.84173 -28.87032 -27.18306 -25.09107 -23.34450 -21.76455 -19.22670 -18.27483 -17.72390 -16.78018 -16.08437 -15.79996 -15.34795 -14.39125 -14.26395 -13.96202 -13.61357 -13.32474 -13.14232 -12.84776 -12.70596 -12.44072 -12.35871 -12.20624 -11.83492 -11.64300 -11.39275 -11.25472 -10.81896 -10.51340 -10.40336 -10.28392 -8.13321 -6.21686 1.38535 1.41946 1.49163 2.43064 3.19274 3.53873 3.93702 3.98876 4.09924 4.40227 4.42200 4.57777 4.62439 4.70865 4.85269 4.90575 4.98329 5.05289 5.16058 5.27001 5.35768 5.37957 5.46222 5.55044 5.60679 5.64769 5.69191 5.93099 5.98090 6.34976 6.93305 7.11667 7.45365 8.98877 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.050720 B = 0.010774 C = 0.009933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.921187 B = 2598.289854 C = 2818.271901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.049 4.049 3 C 0.047 3.953 4 C -0.519 4.519 5 H 0.066 0.934 6 C -0.007 4.007 7 N -0.939 5.939 8 Si 0.958 3.042 9 H -0.265 1.265 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.089 4.089 13 C -0.117 4.117 14 C -0.108 4.108 15 C -0.143 4.143 16 C 0.111 3.889 17 H 0.037 0.963 18 O -0.577 6.577 19 H 0.040 0.960 20 H 0.048 0.952 21 H 0.076 0.924 22 H -0.024 1.024 23 H -0.018 1.018 24 H 0.259 0.741 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 -13.733 2.133 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.049 4.049 3 C 0.010 3.990 4 C -0.557 4.557 5 H 0.084 0.916 6 C -0.203 4.203 7 N -0.580 5.580 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.194 1.194 12 C -0.127 4.127 13 C -0.155 4.155 14 C -0.145 4.145 15 C -0.180 4.180 16 C 0.053 3.947 17 H 0.055 0.945 18 O -0.384 6.384 19 H 0.059 0.941 20 H 0.068 0.932 21 H 0.095 0.905 22 H -0.005 1.005 23 H 0.000 1.000 24 H 0.068 0.932 25 H 0.053 0.947 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.662 -13.251 1.604 13.841 hybrid contribution 0.237 0.961 -0.021 0.990 sum -3.426 -12.290 1.583 12.856 Atomic orbital electron populations 1.21784 0.93726 1.01327 1.01307 1.20478 0.95570 0.94788 0.94049 1.18897 0.94071 0.91506 0.94535 1.21655 1.30350 0.96213 1.07456 0.91643 1.25985 0.95692 0.98870 0.99794 1.70127 1.38813 1.11089 1.37985 0.85601 0.79061 0.77269 0.79741 1.18952 1.21229 1.19384 1.21303 0.98985 0.95521 0.96884 1.21613 1.01030 0.94364 0.98457 1.21400 1.00649 0.98796 0.93688 1.22230 1.02064 0.94521 0.99185 1.21850 0.80475 0.95679 0.96718 0.94482 1.86621 1.20297 1.81622 1.49857 0.94079 0.93248 0.90497 1.00547 1.00001 0.93193 0.94733 0.93741 0.91742 0.91084 0.90114 0.92655 0.90011 0.90069 0.77047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.59 7.53 71.98 0.54 -4.05 16 2 C -0.05 -2.04 0.36 -52.18 -0.02 -2.05 16 3 C 0.05 2.61 3.90 29.85 0.12 2.72 16 4 C -0.52 -30.08 7.65 25.60 0.20 -29.88 16 5 H 0.07 3.60 5.68 -2.91 -0.02 3.59 16 6 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 7 N -0.94 -59.83 13.29 21.45 0.28 -59.55 16 8 Si 0.96 45.75 29.54 68.60 2.03 47.78 16 9 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 C -0.09 -3.55 4.33 30.60 0.13 -3.42 16 13 C -0.12 -3.39 5.65 30.59 0.17 -3.22 16 14 C -0.11 -2.67 5.78 30.59 0.18 -2.49 16 15 C -0.14 -3.55 5.36 30.59 0.16 -3.39 16 16 C 0.11 3.88 2.73 30.59 0.08 3.96 16 17 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 18 O -0.58 -21.00 11.30 -148.98 -1.68 -22.68 16 19 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.05 1.97 6.62 -2.39 -0.02 1.96 16 21 H 0.08 2.23 4.81 -2.39 -0.01 2.22 16 22 H -0.02 -1.45 8.14 -2.39 -0.02 -1.47 16 23 H -0.02 -1.17 7.68 -2.39 -0.02 -1.19 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.03 1.51 7.68 -2.39 -0.02 1.49 16 26 H 0.04 1.92 6.62 -2.39 -0.02 1.90 16 27 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.07 1.88 6.43 -2.39 -0.02 1.86 16 29 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.48 7.68 -2.39 -0.02 1.46 16 31 H 0.08 1.88 6.43 -2.39 -0.02 1.86 16 32 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.38 9.59 9.08 -74.06 -0.67 8.92 16 Total: -1.00 -69.96 250.06 3.07 -66.89 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.42 Total: 9.31 kcal Atomic # 6 Polarization: -43.79 SS G_CDS: 2.03 Total: -41.76 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 0.28 Total: -59.55 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -1.68 Total: -22.68 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -69.96 3.07 -66.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238472212.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.006 kcal (2) G-P(sol) polarization free energy of solvation -69.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds