Wall clock time and date at job start Mon Mar 30 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 C 1.50702 * 109.47159 * 59.99342 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72211 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.53010 * 109.46608 * 119.99547 * 2 1 3 13 13 C 1.52996 * 109.46840 * 60.00074 * 12 2 1 14 14 C 1.53003 * 109.47301 * 59.99886 * 13 12 2 15 15 C 1.52996 * 109.46915 * 299.99916 * 14 13 12 16 16 C 1.52994 * 109.47671 * 239.99461 * 2 1 3 17 17 H 1.08994 * 109.47663 * 180.02562 * 16 2 1 18 18 O 1.42907 * 109.46765 * 60.00226 * 16 2 1 19 19 H 1.09004 * 109.46610 * 60.00175 * 1 2 3 20 20 H 1.09001 * 109.47486 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47277 * 300.00575 * 1 2 3 22 22 H 1.09004 * 109.47066 * 299.99545 * 3 2 1 23 23 H 1.08994 * 109.47405 * 179.97438 * 3 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46676 * 179.97438 * 12 2 1 26 26 H 1.08994 * 109.47333 * 300.00159 * 12 2 1 27 27 H 1.09004 * 109.47066 * 179.97438 * 13 12 2 28 28 H 1.09000 * 109.47665 * 299.99668 * 13 12 2 29 29 H 1.09003 * 109.47094 * 60.00274 * 14 13 12 30 30 H 1.09001 * 109.47249 * 180.02562 * 14 13 12 31 31 H 1.09003 * 109.46851 * 180.02562 * 15 14 13 32 32 H 1.08994 * 109.47269 * 299.99538 * 15 14 13 33 33 H 0.96703 * 113.99333 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5376 2.1529 1.2304 5 1 0.9169 1.6281 1.9415 6 6 1.8755 3.4713 1.4515 7 7 2.6316 4.1104 0.5857 8 14 1.2591 4.3497 2.9804 9 1 0.4333 3.4166 3.7883 10 1 2.4174 4.8105 3.7875 11 1 0.4369 5.5202 2.5813 12 6 2.0399 -0.7212 1.2494 13 6 1.5298 -2.1637 1.2494 14 6 2.0399 -2.8850 0.0002 15 6 1.5300 -2.1638 -1.2490 16 6 2.0401 -0.7213 -1.2491 17 1 3.1300 -0.7217 -1.2489 18 8 1.5638 -0.0477 -2.4160 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.6768 1.9563 -0.8901 23 1 3.1300 1.4424 0.0005 24 1 2.8690 5.0380 0.7411 25 1 3.1299 -0.7216 1.2492 26 1 1.6765 -0.2074 2.1393 27 1 1.8934 -2.6776 2.1393 28 1 0.4398 -2.1637 1.2494 29 1 3.1299 -2.8851 0.0003 30 1 1.6761 -3.9125 0.0000 31 1 1.8930 -2.6780 -2.1390 32 1 0.4400 -2.1638 -1.2491 33 1 1.8489 -0.4515 -3.2471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238487804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:54 Heat of formation + Delta-G solvation = -82.574579 kcal Electronic energy + Delta-G solvation = -13562.025648 eV Core-core repulsion = 11393.376888 eV Total energy + Delta-G solvation = -2168.648760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20151 -35.12933 -33.52294 -31.55139 -29.20349 -26.83095 -25.86734 -23.22129 -21.87236 -20.26209 -17.72108 -16.64590 -16.10384 -14.98172 -14.32527 -14.16434 -13.49573 -13.46220 -12.52858 -12.34340 -12.13374 -12.01207 -11.41856 -11.14081 -10.87872 -10.69436 -10.56114 -10.53366 -10.38838 -10.02211 -9.78076 -9.50524 -9.36432 -8.73379 -8.63682 -8.23559 -5.88851 -3.88950 3.35987 3.43570 3.46867 4.53571 4.79613 5.15621 5.16738 5.41204 5.46395 5.71375 5.76303 5.87020 5.96893 6.02082 6.03940 6.20306 6.35522 6.39526 6.54851 6.57421 6.71041 6.87567 6.92793 7.16443 7.34041 7.35946 7.82163 8.01714 8.16066 8.25067 8.56066 9.17674 9.73002 11.22684 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047137 B = 0.010962 C = 0.009776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.876739 B = 2553.666986 C = 2863.510281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.045 4.045 3 C 0.037 3.963 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.054 3.946 7 N -0.896 5.896 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.286 1.286 12 C -0.099 4.099 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.152 4.152 16 C 0.113 3.887 17 H 0.044 0.956 18 O -0.555 6.555 19 H 0.051 0.949 20 H 0.033 0.967 21 H 0.058 0.942 22 H 0.026 0.974 23 H 0.010 0.990 24 H 0.257 0.743 25 H 0.053 0.947 26 H 0.077 0.923 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.373 -12.046 -1.982 12.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 C 0.000 4.000 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.146 4.146 7 N -0.536 5.536 8 Si 0.714 3.286 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.212 1.212 12 C -0.137 4.137 13 C -0.163 4.163 14 C -0.151 4.151 15 C -0.190 4.190 16 C 0.055 3.945 17 H 0.062 0.938 18 O -0.358 6.358 19 H 0.070 0.930 20 H 0.052 0.948 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.028 0.972 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.572 -11.485 -1.547 11.695 hybrid contribution 0.065 0.198 0.375 0.429 sum -1.507 -11.287 -1.172 11.448 Atomic orbital electron populations 1.21760 0.95396 0.98807 1.02174 1.20543 0.95655 0.98171 0.90180 1.19082 0.95547 0.88077 0.97316 1.21335 1.30564 0.96002 1.06707 0.92405 1.25018 0.95482 0.97741 0.96378 1.69994 1.37339 1.10692 1.35566 0.86638 0.78554 0.79810 0.83601 1.19824 1.21229 1.21191 1.21522 0.99917 0.93046 0.99176 1.21690 1.00953 0.97106 0.96582 1.21443 1.00442 0.98127 0.95047 1.22326 1.02055 0.97095 0.97509 1.21943 0.96181 0.89631 0.86769 0.93755 1.86680 1.77353 1.56574 1.15192 0.93030 0.94840 0.92288 0.95588 0.97214 0.93307 0.92839 0.90481 0.92847 0.91938 0.92359 0.92769 0.93003 0.91128 0.79477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 7.38 37.16 0.27 -2.24 16 2 C -0.05 -0.95 0.36 -154.51 -0.06 -1.00 16 3 C 0.04 0.97 3.90 -27.88 -0.11 0.87 16 4 C -0.51 -14.30 7.65 -34.44 -0.26 -14.57 16 5 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 8 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 C -0.10 -1.87 4.48 -26.73 -0.12 -1.99 16 13 C -0.13 -1.90 5.65 -26.73 -0.15 -2.05 16 14 C -0.11 -1.53 5.92 -26.73 -0.16 -1.69 16 15 C -0.15 -2.20 5.27 -26.73 -0.14 -2.34 16 16 C 0.11 2.04 2.58 -26.73 -0.07 1.97 16 17 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 18 O -0.55 -10.20 11.97 -35.23 -0.42 -10.63 16 19 H 0.05 1.10 7.68 -51.93 -0.40 0.70 16 20 H 0.03 0.58 4.81 -51.93 -0.25 0.33 16 21 H 0.06 1.26 6.62 -51.93 -0.34 0.91 16 22 H 0.03 0.76 7.68 -51.93 -0.40 0.37 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.08 1.58 6.62 -51.93 -0.34 1.23 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.94 6.43 -51.93 -0.33 0.60 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 33 H 0.36 4.71 9.08 45.56 0.41 5.12 16 LS Contribution 251.09 15.07 3.78 3.78 Total: -1.00 -31.27 251.09 -6.19 -37.47 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.38 Total: 0.78 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -0.89 Total: -21.57 kcal Atomic # 7 Polarization: -27.56 SS G_CDS: 0.74 Total: -26.82 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: -0.42 Total: -10.63 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.27 -6.19 -37.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238487804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.108 kcal (2) G-P(sol) polarization free energy of solvation -31.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds