Wall clock time and date at job start Mon Mar 30 2020 01:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47459 * 2 1 4 4 C 1.50702 * 109.47159 * 59.99342 * 3 2 1 5 5 H 1.08002 * 120.00299 * 0.02562 * 4 3 2 6 6 C 1.37884 * 119.99942 * 179.72211 * 4 3 2 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 3 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 3 9 9 H 1.48496 * 109.47341 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46983 * 120.00379 * 8 6 4 11 11 H 1.48503 * 109.47491 * 240.00192 * 8 6 4 12 12 C 1.53010 * 109.46608 * 119.99547 * 2 1 3 13 13 C 1.52996 * 109.46840 * 60.00074 * 12 2 1 14 14 C 1.53003 * 109.47301 * 59.99886 * 13 12 2 15 15 C 1.52996 * 109.46915 * 299.99916 * 14 13 12 16 16 C 1.52994 * 109.47671 * 239.99461 * 2 1 3 17 17 H 1.08994 * 109.47663 * 180.02562 * 16 2 1 18 18 O 1.42907 * 109.46765 * 60.00226 * 16 2 1 19 19 H 1.09004 * 109.46610 * 60.00175 * 1 2 3 20 20 H 1.09001 * 109.47486 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47277 * 300.00575 * 1 2 3 22 22 H 1.09004 * 109.47066 * 299.99545 * 3 2 1 23 23 H 1.08994 * 109.47405 * 179.97438 * 3 2 1 24 24 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46676 * 179.97438 * 12 2 1 26 26 H 1.08994 * 109.47333 * 300.00159 * 12 2 1 27 27 H 1.09004 * 109.47066 * 179.97438 * 13 12 2 28 28 H 1.09000 * 109.47665 * 299.99668 * 13 12 2 29 29 H 1.09003 * 109.47094 * 60.00274 * 14 13 12 30 30 H 1.09001 * 109.47249 * 180.02562 * 14 13 12 31 31 H 1.09003 * 109.46851 * 180.02562 * 15 14 13 32 32 H 1.08994 * 109.47269 * 299.99538 * 15 14 13 33 33 H 0.96703 * 113.99333 * 180.02562 * 18 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5376 2.1529 1.2304 5 1 0.9169 1.6281 1.9415 6 6 1.8755 3.4713 1.4515 7 7 2.6316 4.1104 0.5857 8 14 1.2591 4.3497 2.9804 9 1 0.4333 3.4166 3.7883 10 1 2.4174 4.8105 3.7875 11 1 0.4369 5.5202 2.5813 12 6 2.0399 -0.7212 1.2494 13 6 1.5298 -2.1637 1.2494 14 6 2.0399 -2.8850 0.0002 15 6 1.5300 -2.1638 -1.2490 16 6 2.0401 -0.7213 -1.2491 17 1 3.1300 -0.7217 -1.2489 18 8 1.5638 -0.0477 -2.4160 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 1.6768 1.9563 -0.8901 23 1 3.1300 1.4424 0.0005 24 1 2.8690 5.0380 0.7411 25 1 3.1299 -0.7216 1.2492 26 1 1.6765 -0.2074 2.1393 27 1 1.8934 -2.6776 2.1393 28 1 0.4398 -2.1637 1.2494 29 1 3.1299 -2.8851 0.0003 30 1 1.6761 -3.9125 0.0000 31 1 1.8930 -2.6780 -2.1390 32 1 0.4400 -2.1638 -1.2491 33 1 1.8489 -0.4515 -3.2471 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238487804.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:53 Heat of formation + Delta-G solvation = -104.201938 kcal Electronic energy + Delta-G solvation = -13562.963481 eV Core-core repulsion = 11393.376888 eV Total energy + Delta-G solvation = -2169.586593 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66936 -36.58447 -35.37932 -33.40771 -30.52985 -28.85775 -27.45411 -25.10187 -23.30051 -21.68201 -19.28160 -18.28735 -18.06177 -16.71979 -16.02094 -15.59933 -15.08115 -14.75819 -14.10479 -14.01511 -13.92173 -13.61044 -13.00287 -12.82903 -12.68013 -12.50805 -12.20194 -12.06980 -11.93870 -11.67679 -11.43011 -11.05487 -10.95919 -10.56531 -10.49116 -10.28976 -8.13986 -6.22170 1.38548 1.39070 1.51886 2.42737 3.18884 3.49954 3.90319 3.92801 4.17272 4.35444 4.42380 4.53222 4.61121 4.63112 4.75951 4.86317 5.04669 5.12955 5.19769 5.24083 5.29931 5.35529 5.47995 5.52989 5.55363 5.59411 5.71613 5.92833 5.95616 6.34316 6.92937 7.09402 7.44962 8.98670 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047137 B = 0.010962 C = 0.009776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.876739 B = 2553.666986 C = 2863.510281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C 0.046 3.954 4 C -0.516 4.516 5 H 0.066 0.934 6 C -0.008 4.008 7 N -0.939 5.939 8 Si 0.959 3.041 9 H -0.259 1.259 10 H -0.280 1.280 11 H -0.282 1.282 12 C -0.097 4.097 13 C -0.119 4.119 14 C -0.111 4.111 15 C -0.142 4.142 16 C 0.112 3.888 17 H 0.035 0.965 18 O -0.581 6.581 19 H 0.031 0.969 20 H 0.069 0.931 21 H 0.041 0.959 22 H -0.017 1.017 23 H -0.025 1.025 24 H 0.259 0.741 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -14.268 -1.184 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C 0.009 3.991 4 C -0.555 4.555 5 H 0.084 0.916 6 C -0.204 4.204 7 N -0.580 5.580 8 Si 0.784 3.216 9 H -0.183 1.183 10 H -0.206 1.206 11 H -0.208 1.208 12 C -0.134 4.134 13 C -0.156 4.156 14 C -0.149 4.149 15 C -0.179 4.179 16 C 0.054 3.946 17 H 0.053 0.947 18 O -0.388 6.388 19 H 0.050 0.950 20 H 0.088 0.912 21 H 0.060 0.940 22 H 0.001 0.999 23 H -0.006 1.006 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -2.429 -13.733 -0.758 13.967 hybrid contribution 0.368 0.921 0.060 0.994 sum -2.061 -12.812 -0.698 12.995 Atomic orbital electron populations 1.21656 0.94717 1.00525 1.00297 1.20486 0.96162 0.95020 0.93196 1.18909 0.93217 0.91974 0.94992 1.21709 1.30166 0.96399 1.07176 0.91581 1.25994 0.95703 0.98844 0.99873 1.70149 1.38891 1.11127 1.37871 0.85481 0.78175 0.78497 0.79422 1.18264 1.20589 1.20843 1.21440 0.99321 0.95731 0.96938 1.21642 1.01169 0.94164 0.98664 1.21473 1.00756 0.99324 0.93298 1.22231 1.01935 0.94217 0.99533 1.21874 0.95681 0.91709 0.85365 0.94654 1.86624 1.77651 1.57919 1.16577 0.94971 0.91230 0.94006 0.99879 1.00632 0.93199 0.93779 0.92682 0.90785 0.91430 0.92044 0.89539 0.90098 0.91085 0.76843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.60 7.38 71.98 0.53 -4.07 16 2 C -0.05 -2.04 0.36 -52.18 -0.02 -2.06 16 3 C 0.05 2.57 3.90 29.85 0.12 2.69 16 4 C -0.52 -29.95 7.65 25.60 0.20 -29.76 16 5 H 0.07 3.65 5.68 -2.91 -0.02 3.63 16 6 C -0.01 -0.46 5.46 84.66 0.46 0.00 16 7 N -0.94 -59.81 13.29 21.45 0.28 -59.53 16 8 Si 0.96 45.78 29.54 68.60 2.03 47.81 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 10 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C -0.10 -3.60 4.48 30.60 0.14 -3.46 16 13 C -0.12 -3.20 5.65 30.59 0.17 -3.03 16 14 C -0.11 -2.54 5.92 30.59 0.18 -2.36 16 15 C -0.14 -3.60 5.27 30.59 0.16 -3.44 16 16 C 0.11 3.96 2.58 30.59 0.08 4.04 16 17 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 18 O -0.58 -21.34 11.97 -148.98 -1.78 -23.13 16 19 H 0.03 1.37 7.68 -2.38 -0.02 1.35 16 20 H 0.07 2.25 4.81 -2.39 -0.01 2.24 16 21 H 0.04 1.77 6.62 -2.39 -0.02 1.76 16 22 H -0.02 -1.09 7.68 -2.38 -0.02 -1.11 16 23 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 24 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 2.25 6.62 -2.39 -0.02 2.23 16 27 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 28 H 0.07 1.77 6.43 -2.39 -0.02 1.75 16 29 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.07 1.83 6.43 -2.39 -0.02 1.82 16 33 H 0.38 9.64 9.08 -74.06 -0.67 8.96 16 Total: -1.00 -70.09 251.09 2.96 -67.12 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.41 Total: 9.16 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 2.02 Total: -41.44 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: 0.28 Total: -59.53 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -1.78 Total: -23.13 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -70.09 2.96 -67.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238487804.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.077 kcal (2) G-P(sol) polarization free energy of solvation -70.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds