Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53081 * 1 3 3 H 1.10932 * 106.79333 * 2 1 4 4 C 1.52559 * 109.98389 * 244.05854 * 2 1 3 5 5 C 1.52966 * 110.16084 * 281.81483 * 4 2 1 6 6 H 1.08762 * 110.26409 * 61.92760 * 5 4 2 7 7 C 1.53241 * 109.32693 * 181.88644 * 5 4 2 8 8 C 1.50697 * 109.47741 * 294.33576 * 7 5 4 9 9 H 1.08003 * 119.99686 * 359.97438 * 8 7 5 10 10 C 1.37878 * 120.00487 * 179.97438 * 8 7 5 11 11 N 1.31515 * 119.99405 * 0.02562 * 10 8 7 12 12 Si 1.86798 * 119.99957 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46859 * 90.00639 * 12 10 8 14 14 H 1.48500 * 109.46820 * 209.99912 * 12 10 8 15 15 H 1.48499 * 109.47190 * 330.00089 * 12 10 8 16 16 C 1.52975 * 108.51981 * 301.05401 * 5 4 2 17 17 C 1.52566 * 110.12707 * 59.03821 * 16 5 4 18 18 H 1.10922 * 107.15705 * 193.72756 * 17 16 5 19 19 C 1.53074 * 109.99491 * 77.98694 * 17 16 5 20 20 O 1.40754 * 111.57272 * 117.65220 * 2 1 3 21 21 H 1.09008 * 109.47188 * 302.34331 * 1 2 3 22 22 H 1.08998 * 109.47134 * 62.34455 * 1 2 3 23 23 H 1.09000 * 109.46915 * 182.34791 * 1 2 3 24 24 H 1.09234 * 109.57552 * 161.47202 * 4 2 1 25 25 H 1.09241 * 109.56427 * 42.14743 * 4 2 1 26 26 H 1.09004 * 109.46907 * 54.33970 * 7 5 4 27 27 H 1.09010 * 109.47345 * 174.33326 * 7 5 4 28 28 H 0.97010 * 119.99385 * 180.02562 * 11 10 8 29 29 H 1.09235 * 109.34819 * 179.48596 * 16 5 4 30 30 H 1.09226 * 109.35312 * 298.57651 * 16 5 4 31 31 H 1.09004 * 109.46963 * 59.99831 * 19 17 16 32 32 H 1.08995 * 109.47417 * 179.97438 * 19 17 16 33 33 H 1.08993 * 109.47442 * 300.00129 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5308 0.0000 0.0000 3 1 1.8513 1.0620 0.0000 4 6 2.0522 -0.6272 -1.2893 5 6 1.9561 -2.1518 -1.2103 6 1 0.9184 -2.4586 -1.1010 7 6 2.5275 -2.7631 -2.4941 8 6 1.6568 -2.3813 -3.6633 9 1 0.7835 -1.7653 -3.5077 10 6 1.9750 -2.8185 -4.9316 11 7 3.0381 -3.5691 -5.1209 12 14 0.8952 -2.3457 -6.3807 13 1 1.3832 -1.0714 -6.9666 14 1 0.9498 -3.4160 -7.4086 15 1 -0.5057 -2.1739 -5.9189 16 6 2.7789 -2.6291 -0.0123 17 6 2.2527 -1.9956 1.2719 18 1 3.0173 -2.1650 2.0575 19 6 0.9819 -2.7165 1.7286 20 8 2.0483 -0.6075 1.1594 21 1 -0.3634 0.5498 0.8683 22 1 -0.3633 0.4770 -0.9102 23 1 -0.3633 -1.0268 0.0421 24 1 3.0944 -0.3377 -1.4417 25 1 1.4600 -0.2705 -2.1351 26 1 3.5383 -2.3887 -2.6562 27 1 2.5531 -3.8488 -2.3994 28 1 3.2622 -3.8763 -6.0134 29 1 2.7121 -3.7169 0.0622 30 1 3.8247 -2.3490 -0.1568 31 1 1.2064 -3.7672 1.9128 32 1 0.6137 -2.2578 2.6462 33 1 0.2209 -2.6384 0.9522 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250891165.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -96.408360 kcal Electronic energy + Delta-G solvation = -13339.160524 eV Core-core repulsion = 11169.911886 eV Total energy + Delta-G solvation = -2169.248638 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.72258 -36.40133 -34.35888 -34.22186 -31.21955 -28.92626 -27.13007 -25.47241 -23.68711 -22.30565 -19.29929 -18.48202 -17.30653 -16.63932 -16.43272 -15.79981 -15.60586 -14.89872 -14.38040 -13.99138 -13.89219 -13.39680 -13.27348 -12.99698 -12.92715 -12.61278 -12.51981 -12.13860 -11.92762 -11.81142 -11.65376 -11.35862 -10.90878 -10.56768 -10.48570 -10.21683 -8.19285 -6.29015 1.38681 1.39527 1.50413 2.40141 2.78995 3.13894 3.89051 3.89449 4.07982 4.10845 4.14705 4.39453 4.55351 4.60002 4.71373 4.71972 4.86736 5.01722 5.02804 5.06658 5.10639 5.25643 5.32914 5.37926 5.42810 5.44218 5.52731 5.76780 5.86335 6.26487 6.86684 6.87666 7.39474 8.92629 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047872 B = 0.009598 C = 0.008753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.753975 B = 2916.648796 C = 3198.197434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.102 3.898 3 H 0.099 0.901 4 C -0.131 4.131 5 C -0.072 4.072 6 H 0.057 0.943 7 C 0.033 3.967 8 C -0.529 4.529 9 H 0.061 0.939 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.262 1.262 16 C -0.144 4.144 17 C 0.102 3.898 18 H 0.103 0.897 19 C -0.174 4.174 20 O -0.392 6.392 21 H 0.071 0.929 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.067 0.933 26 H -0.013 1.013 27 H -0.013 1.013 28 H 0.262 0.738 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.177 4.968 11.180 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.044 3.956 3 H 0.117 0.883 4 C -0.168 4.168 5 C -0.091 4.091 6 H 0.075 0.925 7 C -0.004 4.004 8 C -0.567 4.567 9 H 0.080 0.920 10 C -0.200 4.200 11 N -0.576 5.576 12 Si 0.785 3.215 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.187 1.187 16 C -0.181 4.181 17 C 0.044 3.956 18 H 0.121 0.879 19 C -0.231 4.231 20 O -0.312 6.312 21 H 0.090 0.910 22 H 0.086 0.914 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.005 0.995 27 H 0.005 0.995 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.041 4.984 11.192 12.901 hybrid contribution -0.210 -0.387 -1.500 1.563 sum -4.250 4.596 9.692 11.538 Atomic orbital electron populations 1.22423 0.95740 1.02195 1.02625 1.21889 0.93554 0.96230 0.83881 0.88320 1.22020 1.00997 0.95868 0.97962 1.20899 0.98615 0.95132 0.94415 0.92455 1.19082 0.94728 0.94037 0.92547 1.21624 1.10800 1.31258 0.93023 0.92046 1.25963 0.96665 0.95147 1.02197 1.70109 1.27753 1.36900 1.22827 0.85513 0.79423 0.77924 0.78621 1.19854 1.20960 1.18661 1.22187 0.99606 1.01057 0.95295 1.21887 0.97372 0.80198 0.96097 0.87927 1.22441 0.98045 1.01058 1.01560 1.86297 1.84000 1.22182 1.38688 0.90979 0.91360 0.93248 0.93320 0.91421 0.99486 0.99456 0.92939 0.91088 0.92653 0.90656 0.91099 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.68 9.38 72.01 0.68 -4.01 16 2 C 0.10 3.11 3.43 30.47 0.10 3.21 16 3 H 0.10 2.68 8.28 -1.34 -0.01 2.67 16 4 C -0.13 -4.93 4.57 30.44 0.14 -4.79 16 5 C -0.07 -2.98 2.06 -10.73 -0.02 -3.00 16 6 H 0.06 2.40 6.71 -2.51 -0.02 2.38 16 7 C 0.03 1.76 4.44 29.93 0.13 1.89 16 8 C -0.53 -29.90 8.43 25.60 0.22 -29.69 16 9 H 0.06 3.32 7.09 -2.91 -0.02 3.30 16 10 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 11 N -0.94 -57.45 13.29 21.45 0.28 -57.16 16 12 Si 0.96 44.42 29.54 68.60 2.03 46.45 16 13 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 16 C -0.14 -5.01 4.77 30.44 0.15 -4.86 16 17 C 0.10 2.93 3.43 30.47 0.10 3.04 16 18 H 0.10 2.54 8.28 -1.35 -0.01 2.53 16 19 C -0.17 -4.37 9.32 72.01 0.67 -3.70 16 20 O -0.39 -12.17 9.72 -143.63 -1.40 -13.56 16 21 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 22 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 23 H 0.05 1.43 5.77 -2.39 -0.01 1.41 16 24 H 0.05 1.91 8.16 -2.26 -0.02 1.89 16 25 H 0.07 2.69 6.84 -2.26 -0.02 2.68 16 26 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 27 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 28 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 29 H 0.07 2.39 8.05 -2.26 -0.02 2.38 16 30 H 0.05 1.99 8.16 -2.27 -0.02 1.97 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.05 1.30 5.63 -2.39 -0.01 1.28 16 Total: -1.00 -63.12 259.19 4.62 -58.50 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.08 Total: 7.36 kcal Atomic # 6 Polarization: -44.21 SS G_CDS: 2.63 Total: -41.58 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: 0.28 Total: -57.16 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: -1.40 Total: -13.56 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -63.12 4.62 -58.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250891165.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.906 kcal (2) G-P(sol) polarization free energy of solvation -63.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds