Wall clock time and date at job start Mon Mar 30 2020 02:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 109.47063 * 2 1 4 4 C 1.53001 * 109.46637 * 239.99853 * 2 1 3 5 5 C 1.53002 * 109.46963 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47092 * 60.00194 * 5 4 2 7 7 O 1.42896 * 109.47412 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.47430 * 60.00067 * 6 5 4 9 9 H 1.07999 * 119.99846 * 240.00674 * 8 6 5 10 10 C 1.37878 * 119.99666 * 59.99689 * 8 6 5 11 11 N 1.31516 * 119.99950 * 0.02562 * 10 8 6 12 12 Si 1.86800 * 119.99864 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.47102 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47389 * 120.00084 * 12 10 8 15 15 H 1.48501 * 109.47057 * 240.00065 * 12 10 8 16 16 C 1.53006 * 109.47445 * 300.00075 * 6 5 4 17 17 C 1.53000 * 109.47233 * 120.00371 * 2 1 3 18 18 H 1.09002 * 109.47398 * 59.99826 * 17 2 1 19 19 C 1.52997 * 109.47060 * 299.99657 * 17 2 1 20 20 H 1.09000 * 109.46986 * 299.99832 * 1 2 3 21 21 H 1.08993 * 109.47662 * 60.00055 * 1 2 3 22 22 H 1.09002 * 109.47075 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47437 * 60.00474 * 4 2 1 24 24 H 1.09002 * 109.47508 * 299.99876 * 4 2 1 25 25 H 1.09002 * 109.47067 * 300.00341 * 5 4 2 26 26 H 1.09000 * 109.47312 * 180.02562 * 5 4 2 27 27 H 0.96703 * 114.00193 * 300.00283 * 7 6 5 28 28 H 0.97004 * 119.99395 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.46589 * 300.00331 * 16 6 5 30 30 H 1.08996 * 109.47165 * 179.97438 * 16 6 5 31 31 H 1.09002 * 109.47153 * 300.00319 * 19 17 2 32 32 H 1.08998 * 109.47533 * 59.99948 * 19 17 2 33 33 H 1.08996 * 109.47853 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5699 -0.7208 -1.2497 6 6 4.0805 -1.4417 -0.0005 7 8 5.5094 -1.4407 -0.0005 8 6 3.5786 -2.8627 -0.0001 9 1 2.9580 -3.2160 0.8101 10 6 3.9118 -3.7117 -1.0342 11 7 4.6678 -3.2815 -2.0206 12 14 3.2892 -5.4729 -1.0341 13 1 2.4647 -5.7064 0.1788 14 1 2.4642 -5.7064 -2.2466 15 1 4.4443 -6.4062 -1.0341 16 6 3.5706 -0.7205 1.2489 17 6 2.0401 -0.7213 1.2492 18 1 1.6767 -1.7490 1.2492 19 6 1.5301 -0.0001 2.4985 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 1.6766 -0.2075 -2.1393 24 1 1.6766 -1.7490 -1.2493 25 1 3.9329 0.3070 -1.2499 26 1 3.9332 -1.2343 -2.1399 27 1 5.9031 -1.8821 -0.7656 28 1 4.9024 -3.8790 -2.7479 29 1 3.9335 0.3073 1.2486 30 1 3.9339 -1.2343 2.1388 31 1 1.8935 1.0276 2.4985 32 1 0.4402 0.0000 2.4986 33 1 1.8938 -0.5136 3.3885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252546109.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:09 Heat of formation + Delta-G solvation = -101.033861 kcal Electronic energy + Delta-G solvation = -13838.626247 eV Core-core repulsion = 11669.177032 eV Total energy + Delta-G solvation = -2169.449215 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.26407 -36.87648 -34.12639 -32.77275 -32.01284 -28.22745 -27.02537 -25.44302 -22.53245 -21.36132 -20.53398 -18.36028 -17.06725 -16.49689 -15.54018 -15.34376 -15.02446 -14.93849 -14.08722 -13.88001 -13.40755 -13.27537 -12.81452 -12.73952 -12.59166 -12.41676 -12.33722 -12.19048 -12.10135 -11.60879 -11.39695 -11.10378 -10.91203 -10.59298 -10.48459 -9.88431 -8.10354 -6.25406 1.37939 1.42012 1.51485 2.41404 3.10577 3.87989 3.98571 4.13119 4.34816 4.56910 4.70349 4.75716 4.84197 4.85358 4.86600 4.94079 5.06082 5.15106 5.20568 5.23218 5.29045 5.32516 5.45750 5.60110 5.63104 5.70976 5.78798 5.88551 6.14320 6.32324 6.79266 7.42562 7.53228 8.91033 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.035019 B = 0.014318 C = 0.013131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.380064 B = 1955.102172 C = 2131.905838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.063 0.937 4 C -0.090 4.090 5 C -0.130 4.130 6 C 0.229 3.771 7 O -0.611 6.611 8 C -0.531 4.531 9 H 0.052 0.948 10 C 0.026 3.974 11 N -0.917 5.917 12 Si 0.948 3.052 13 H -0.271 1.271 14 H -0.279 1.279 15 H -0.284 1.284 16 C -0.086 4.086 17 C -0.073 4.073 18 H 0.058 0.942 19 C -0.140 4.140 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.047 0.953 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.022 0.978 26 H 0.062 0.938 27 H 0.373 0.627 28 H 0.265 0.735 29 H 0.043 0.957 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.409 4.835 3.163 9.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.098 4.098 3 H 0.081 0.919 4 C -0.128 4.128 5 C -0.168 4.168 6 C 0.191 3.809 7 O -0.419 6.419 8 C -0.569 4.569 9 H 0.070 0.930 10 C -0.173 4.173 11 N -0.558 5.558 12 Si 0.775 3.225 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.210 1.210 16 C -0.124 4.124 17 C -0.091 4.091 18 H 0.076 0.924 19 C -0.197 4.197 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.066 0.934 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.222 0.778 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.436 5.103 3.575 9.702 hybrid contribution 0.332 -1.478 -0.875 1.749 sum -7.105 3.626 2.700 8.421 Atomic orbital electron populations 1.21830 0.93935 1.01637 1.02260 1.21098 0.96288 0.98349 0.94080 0.91892 1.21317 0.94849 0.99775 0.96872 1.21984 0.96458 0.96719 1.01637 1.19002 0.77457 0.92849 0.91606 1.86089 1.23716 1.81358 1.50784 1.21898 1.31114 0.97397 1.06522 0.93006 1.25617 0.95006 1.01824 0.94827 1.69711 1.38165 1.36673 1.11298 0.85656 0.78106 0.80793 0.77956 1.19533 1.20522 1.20964 1.21388 0.96171 0.97974 0.96887 1.20990 0.93219 0.99537 0.95363 0.92399 1.21856 1.01574 1.00087 0.96195 0.90942 0.92255 0.93414 0.93205 0.93386 0.95925 0.91899 0.77781 0.92544 0.93856 0.94340 0.92400 0.90852 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 8.84 71.98 0.64 -3.15 16 2 C -0.08 -2.73 2.25 -10.79 -0.02 -2.75 16 3 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.09 -3.72 4.98 30.60 0.15 -3.57 16 5 C -0.13 -6.23 4.86 30.59 0.15 -6.08 16 6 C 0.23 11.70 0.84 -11.54 -0.01 11.69 16 7 O -0.61 -33.79 12.96 -148.98 -1.93 -35.72 16 8 C -0.53 -28.58 6.30 25.60 0.16 -28.42 16 9 H 0.05 2.80 6.71 -2.91 -0.02 2.78 16 10 C 0.03 1.38 5.22 84.65 0.44 1.82 16 11 N -0.92 -50.06 9.69 21.45 0.21 -49.86 16 12 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 13 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 14 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 15 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 16 C -0.09 -3.80 4.34 30.61 0.13 -3.67 16 17 C -0.07 -2.66 2.02 -10.78 -0.02 -2.68 16 18 H 0.06 2.36 6.62 -2.39 -0.02 2.34 16 19 C -0.14 -3.94 8.84 71.98 0.64 -3.31 16 20 H 0.07 1.64 6.43 -2.39 -0.02 1.63 16 21 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.05 2.18 7.22 -2.39 -0.02 2.16 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.06 3.35 6.07 -2.39 -0.01 3.34 16 27 H 0.37 21.01 7.15 -74.05 -0.53 20.48 16 28 H 0.26 13.82 8.31 -92.71 -0.77 13.05 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.07 1.74 6.43 -2.39 -0.02 1.72 16 33 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -57.36 250.21 3.11 -54.25 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.55 Total: 26.46 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 2.25 Total: -40.09 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.21 Total: -49.86 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.93 Total: -35.72 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -57.36 3.11 -54.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252546109.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.782 kcal (2) G-P(sol) polarization free energy of solvation -57.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds