Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 C 1.52997 * 109.47378 * 239.99769 * 2 1 3 5 5 C 1.52997 * 109.47378 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47236 * 60.00027 * 5 4 2 7 7 O 1.42896 * 109.47260 * 59.99943 * 6 5 4 8 8 C 1.50694 * 109.47424 * 180.02562 * 6 5 4 9 9 H 1.08006 * 120.00207 * 26.97445 * 8 6 5 10 10 C 1.37875 * 120.00432 * 206.97371 * 8 6 5 11 11 N 1.31520 * 120.00404 * 174.17571 * 10 8 6 12 12 Si 1.86804 * 119.99649 * 354.18120 * 10 8 6 13 13 H 1.48499 * 109.47190 * 86.55207 * 12 10 8 14 14 H 1.48507 * 109.47049 * 206.55116 * 12 10 8 15 15 H 1.48498 * 109.46942 * 326.55066 * 12 10 8 16 16 C 1.52997 * 109.46915 * 300.00257 * 6 5 4 17 17 C 1.52997 * 109.47378 * 59.99830 * 16 6 5 18 18 H 1.09000 * 109.47053 * 60.00228 * 17 16 6 19 19 C 1.53002 * 109.46930 * 180.02562 * 17 16 6 20 20 H 1.09000 * 109.47176 * 300.00095 * 1 2 3 21 21 H 1.08997 * 109.47135 * 60.00617 * 1 2 3 22 22 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46842 * 299.99901 * 4 2 1 24 24 H 1.08997 * 109.47302 * 59.99717 * 4 2 1 25 25 H 1.09009 * 109.47201 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47331 * 300.00231 * 5 4 2 27 27 H 0.96698 * 114.00078 * 55.05936 * 7 6 5 28 28 H 0.96998 * 119.99536 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47078 * 299.99444 * 16 6 5 30 30 H 1.08997 * 109.47302 * 180.02562 * 16 6 5 31 31 H 1.09008 * 109.46911 * 179.97438 * 19 17 16 32 32 H 1.09002 * 109.47230 * 299.99589 * 19 17 16 33 33 H 1.09002 * 109.47678 * 60.00407 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0002 7 8 3.6047 -2.7890 0.0002 8 6 5.5875 -1.4405 -0.0002 9 1 6.1270 -0.6559 -0.5099 10 6 6.2776 -2.4410 0.6506 11 7 7.5878 -2.5055 0.5554 12 14 5.3517 -3.7051 1.6676 13 1 4.9115 -4.8197 0.7907 14 1 6.2434 -4.2343 2.7309 15 1 4.1644 -3.0663 2.2899 16 6 3.5705 -0.7203 1.2490 17 6 2.0405 -0.7208 1.2493 18 1 1.6776 -1.7486 1.2496 19 6 1.5306 0.0010 2.4982 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6767 -1.7489 -1.2491 24 1 1.6767 -0.2076 -2.1392 25 1 3.9334 -1.2350 -2.1393 26 1 3.9330 0.3071 -1.2497 27 1 3.8264 -3.2846 -0.8000 28 1 8.0732 -3.2097 1.0130 29 1 3.9335 0.3075 1.2487 30 1 3.9346 -1.2335 2.1390 31 1 0.4405 0.0010 2.4982 32 1 1.8942 -0.5121 3.3885 33 1 1.8934 1.0289 2.4975 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252546111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = -81.951462 kcal Electronic energy + Delta-G solvation = -13800.734456 eV Core-core repulsion = 11632.112716 eV Total energy + Delta-G solvation = -2168.621740 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.93587 -35.43184 -32.21097 -31.60414 -30.72215 -27.16480 -25.62773 -23.47753 -21.29612 -19.70996 -18.95081 -17.00114 -15.17694 -14.93247 -14.36577 -14.05529 -13.60429 -13.21419 -12.78881 -12.59148 -11.96977 -11.71713 -11.55957 -11.45582 -11.28927 -10.98728 -10.75122 -10.57030 -10.23385 -10.02166 -9.88876 -9.58620 -9.46703 -8.89610 -8.39538 -8.11439 -6.05027 -4.14839 3.55590 3.61846 3.81032 4.63175 5.17936 5.19606 5.29619 5.35085 5.53625 5.71528 5.86399 5.88860 5.94872 6.09079 6.14988 6.19589 6.31680 6.33761 6.43189 6.51083 6.52605 6.61188 6.76604 6.81597 6.96061 7.14262 7.24672 7.50841 7.70832 8.30121 8.81219 8.99045 9.59111 11.04722 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046287 B = 0.013715 C = 0.012433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.776515 B = 2041.039332 C = 2251.466444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.083 4.083 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.129 4.129 6 C 0.224 3.776 7 O -0.565 6.565 8 C -0.555 4.555 9 H 0.073 0.927 10 C 0.069 3.931 11 N -0.898 5.898 12 Si 0.950 3.050 13 H -0.296 1.296 14 H -0.332 1.332 15 H -0.265 1.265 16 C -0.093 4.093 17 C -0.089 4.089 18 H 0.071 0.929 19 C -0.147 4.147 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.050 0.950 23 H 0.061 0.939 24 H 0.045 0.955 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.364 0.636 28 H 0.263 0.737 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.049 0.951 33 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.192 3.231 -0.500 12.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.167 4.167 6 C 0.185 3.815 7 O -0.372 6.372 8 C -0.593 4.593 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.534 5.534 12 Si 0.786 3.214 13 H -0.224 1.224 14 H -0.264 1.264 15 H -0.191 1.191 16 C -0.131 4.131 17 C -0.107 4.107 18 H 0.089 0.911 19 C -0.205 4.205 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.211 0.789 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -12.257 3.358 0.114 12.709 hybrid contribution 0.017 -0.771 -0.073 0.775 sum -12.241 2.587 0.041 12.511 Atomic orbital electron populations 1.21887 0.96407 1.01300 1.00739 1.21111 0.94247 0.99226 0.95559 0.91986 1.21559 0.96930 1.00242 0.96096 1.22118 0.93583 1.01179 0.99868 1.19181 0.92823 0.78632 0.90884 1.86101 1.80573 1.26831 1.43744 1.21446 0.89437 1.12395 1.35977 0.90872 1.25145 0.94851 0.98034 0.95398 1.69997 1.07263 1.33583 1.42603 0.85682 0.77454 0.79988 0.78226 1.22357 1.26430 1.19100 1.21812 0.92134 0.99877 0.99277 1.21210 0.97272 0.99236 0.93007 0.91104 1.21912 1.00010 1.00279 0.98263 0.92921 0.93501 0.93054 0.92020 0.93591 0.92637 0.92372 0.78889 0.92778 0.92113 0.91935 0.93307 0.93231 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.84 37.16 0.33 -1.59 16 2 C -0.08 -1.30 2.25 -90.62 -0.20 -1.51 16 3 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.11 -1.82 5.06 -26.73 -0.14 -1.96 16 5 C -0.13 -2.53 4.86 -26.73 -0.13 -2.66 16 6 C 0.22 5.08 0.54 -91.77 -0.05 5.03 16 7 O -0.57 -12.59 7.03 -35.23 -0.25 -12.84 16 8 C -0.56 -15.36 8.76 -34.44 -0.30 -15.67 16 9 H 0.07 2.21 8.06 -52.48 -0.42 1.79 16 10 C 0.07 2.00 5.46 -17.82 -0.10 1.90 16 11 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 12 Si 0.95 24.44 24.31 -169.99 -4.13 20.31 16 13 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 14 H -0.33 -8.81 7.11 56.52 0.40 -8.41 16 15 H -0.26 -6.68 5.32 56.52 0.30 -6.38 16 16 C -0.09 -1.99 3.93 -26.73 -0.11 -2.09 16 17 C -0.09 -1.57 2.10 -90.62 -0.19 -1.76 16 18 H 0.07 1.36 7.68 -51.93 -0.40 0.96 16 19 C -0.15 -2.23 8.84 37.16 0.33 -1.91 16 20 H 0.05 0.64 6.43 -51.93 -0.33 0.30 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 23 H 0.06 1.03 7.68 -51.93 -0.40 0.63 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 1.08 8.14 -51.92 -0.42 0.65 16 26 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.36 7.35 8.90 45.56 0.41 7.75 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.36 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.06 1.46 5.75 -51.93 -0.30 1.16 16 31 H 0.05 0.65 6.43 -51.92 -0.33 0.31 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 247.98 15.07 3.74 3.74 Total: -1.00 -30.26 247.98 -5.25 -35.51 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -4.82 Total: 2.45 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -0.56 Total: -22.21 kcal Atomic # 7 Polarization: -27.73 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: -0.25 Total: -12.84 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.13 Total: 20.31 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.26 -5.25 -35.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252546111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.441 kcal (2) G-P(sol) polarization free energy of solvation -30.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds