Wall clock time and date at job start Mon Mar 30 2020 02:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47331 * 2 1 4 4 C 1.52997 * 109.47378 * 239.99769 * 2 1 3 5 5 C 1.52997 * 109.47378 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47236 * 60.00027 * 5 4 2 7 7 O 1.42896 * 109.47260 * 59.99943 * 6 5 4 8 8 C 1.50694 * 109.47424 * 180.02562 * 6 5 4 9 9 H 1.08006 * 120.00207 * 26.97445 * 8 6 5 10 10 C 1.37875 * 120.00432 * 206.97371 * 8 6 5 11 11 N 1.31520 * 120.00404 * 174.17571 * 10 8 6 12 12 Si 1.86804 * 119.99649 * 354.18120 * 10 8 6 13 13 H 1.48499 * 109.47190 * 86.55207 * 12 10 8 14 14 H 1.48507 * 109.47049 * 206.55116 * 12 10 8 15 15 H 1.48498 * 109.46942 * 326.55066 * 12 10 8 16 16 C 1.52997 * 109.46915 * 300.00257 * 6 5 4 17 17 C 1.52997 * 109.47378 * 59.99830 * 16 6 5 18 18 H 1.09000 * 109.47053 * 60.00228 * 17 16 6 19 19 C 1.53002 * 109.46930 * 180.02562 * 17 16 6 20 20 H 1.09000 * 109.47176 * 300.00095 * 1 2 3 21 21 H 1.08997 * 109.47135 * 60.00617 * 1 2 3 22 22 H 1.09000 * 109.47053 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46842 * 299.99901 * 4 2 1 24 24 H 1.08997 * 109.47302 * 59.99717 * 4 2 1 25 25 H 1.09009 * 109.47201 * 179.97438 * 5 4 2 26 26 H 1.09002 * 109.47331 * 300.00231 * 5 4 2 27 27 H 0.96698 * 114.00078 * 55.05936 * 7 6 5 28 28 H 0.96998 * 119.99536 * 180.02562 * 11 10 8 29 29 H 1.09002 * 109.47078 * 299.99444 * 16 6 5 30 30 H 1.08997 * 109.47302 * 180.02562 * 16 6 5 31 31 H 1.09008 * 109.46911 * 179.97438 * 19 17 16 32 32 H 1.09002 * 109.47230 * 299.99589 * 19 17 16 33 33 H 1.09002 * 109.47678 * 60.00407 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2495 6 6 4.0806 -1.4416 -0.0002 7 8 3.6047 -2.7890 0.0002 8 6 5.5875 -1.4405 -0.0002 9 1 6.1270 -0.6559 -0.5099 10 6 6.2776 -2.4410 0.6506 11 7 7.5878 -2.5055 0.5554 12 14 5.3517 -3.7051 1.6676 13 1 4.9115 -4.8197 0.7907 14 1 6.2434 -4.2343 2.7309 15 1 4.1644 -3.0663 2.2899 16 6 3.5705 -0.7203 1.2490 17 6 2.0405 -0.7208 1.2493 18 1 1.6776 -1.7486 1.2496 19 6 1.5306 0.0010 2.4982 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 1.6767 -1.7489 -1.2491 24 1 1.6767 -0.2076 -2.1392 25 1 3.9334 -1.2350 -2.1393 26 1 3.9330 0.3071 -1.2497 27 1 3.8264 -3.2846 -0.8000 28 1 8.0732 -3.2097 1.0130 29 1 3.9335 0.3075 1.2487 30 1 3.9346 -1.2335 2.1390 31 1 0.4405 0.0010 2.4982 32 1 1.8942 -0.5121 3.3885 33 1 1.8934 1.0289 2.4975 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252546111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:11 Heat of formation + Delta-G solvation = -102.619081 kcal Electronic energy + Delta-G solvation = -13801.630671 eV Core-core repulsion = 11632.112716 eV Total energy + Delta-G solvation = -2169.517955 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.50634 -37.03818 -34.39885 -33.01290 -32.31560 -28.73639 -27.21557 -25.13011 -22.70835 -21.34424 -20.45560 -19.05334 -17.01155 -16.89950 -15.94221 -15.35073 -15.07494 -14.83085 -14.46889 -14.18273 -13.68986 -13.39323 -13.02615 -12.85431 -12.65066 -12.52133 -12.38173 -12.16095 -11.98162 -11.58943 -11.51297 -11.20425 -10.99022 -10.89001 -10.35875 -9.96791 -8.32356 -6.43515 1.47026 1.51353 1.73696 2.46753 3.03195 3.70054 3.94829 4.00160 4.10413 4.40022 4.44520 4.66287 4.70733 4.73368 4.82220 4.85083 5.02733 5.08200 5.09845 5.14942 5.22464 5.27018 5.31188 5.46640 5.51836 5.59643 5.72309 5.75547 5.82188 6.10654 6.63197 7.05857 7.37034 8.81501 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046287 B = 0.013715 C = 0.012433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.776515 B = 2041.039332 C = 2251.466444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.064 0.936 4 C -0.104 4.104 5 C -0.125 4.125 6 C 0.223 3.777 7 O -0.564 6.564 8 C -0.553 4.553 9 H 0.034 0.966 10 C 0.017 3.983 11 N -0.946 5.946 12 Si 1.010 2.990 13 H -0.283 1.283 14 H -0.344 1.344 15 H -0.257 1.257 16 C -0.094 4.094 17 C -0.084 4.084 18 H 0.059 0.941 19 C -0.144 4.144 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.374 0.626 28 H 0.263 0.737 29 H 0.057 0.943 30 H 0.037 0.963 31 H 0.074 0.926 32 H 0.042 0.958 33 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.201 3.440 -0.543 15.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 H 0.082 0.918 4 C -0.141 4.141 5 C -0.163 4.163 6 C 0.183 3.817 7 O -0.373 6.373 8 C -0.591 4.591 9 H 0.052 0.948 10 C -0.181 4.181 11 N -0.586 5.586 12 Si 0.845 3.155 13 H -0.210 1.210 14 H -0.278 1.278 15 H -0.183 1.183 16 C -0.132 4.132 17 C -0.102 4.102 18 H 0.078 0.922 19 C -0.201 4.201 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.222 0.778 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.290 3.574 0.053 15.703 hybrid contribution 1.024 -0.769 -0.118 1.287 sum -14.266 2.805 -0.065 14.539 Atomic orbital electron populations 1.21824 0.93739 1.01866 1.02263 1.21115 0.96414 0.98730 0.93828 0.91797 1.21518 0.93905 1.00895 0.97775 1.22002 0.96358 1.00133 0.97835 1.19140 0.89678 0.79501 0.93357 1.86047 1.80014 1.26649 1.44567 1.21841 0.92511 1.10623 1.34141 0.94790 1.25918 0.95326 1.00231 0.96608 1.70121 1.08960 1.34950 1.44523 0.84694 0.76109 0.78034 0.76696 1.21013 1.27779 1.18256 1.21733 0.95384 0.98934 0.97153 1.21136 0.94060 0.99439 0.95584 0.92232 1.21881 1.01609 1.00141 0.96510 0.91645 0.91859 0.92949 0.91941 0.91104 0.92989 0.92998 0.77815 0.92804 0.92481 0.94415 0.90728 0.93883 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.84 71.98 0.64 -2.37 16 2 C -0.08 -2.30 2.25 -10.79 -0.02 -2.32 16 3 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 4 C -0.10 -3.08 5.06 30.59 0.15 -2.92 16 5 C -0.13 -4.73 4.86 30.59 0.15 -4.58 16 6 C 0.22 9.96 0.54 -11.54 -0.01 9.96 16 7 O -0.56 -24.21 7.03 -148.98 -1.05 -25.26 16 8 C -0.55 -31.32 8.76 25.60 0.22 -31.10 16 9 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 10 C 0.02 1.02 5.46 84.65 0.46 1.48 16 11 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 12 Si 1.01 50.83 24.31 68.60 1.67 52.50 16 13 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 14 H -0.34 -17.94 7.11 99.48 0.71 -17.23 16 15 H -0.26 -12.49 5.32 99.48 0.53 -11.96 16 16 C -0.09 -3.94 3.93 30.59 0.12 -3.81 16 17 C -0.08 -2.74 2.10 -10.79 -0.02 -2.77 16 18 H 0.06 2.11 7.68 -2.39 -0.02 2.09 16 19 C -0.14 -3.92 8.84 71.98 0.64 -3.29 16 20 H 0.06 1.25 6.43 -2.39 -0.02 1.24 16 21 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.06 1.87 7.68 -2.39 -0.02 1.85 16 24 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.37 14.43 8.90 -74.06 -0.66 13.77 16 28 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 30 H 0.04 1.73 5.75 -2.39 -0.01 1.72 16 31 H 0.07 1.65 6.43 -2.38 -0.02 1.64 16 32 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -65.68 247.98 3.48 -62.20 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.23 Total: 12.22 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 2.33 Total: -41.72 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.30 Total: -59.94 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -1.05 Total: -25.26 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 1.67 Total: 52.50 kcal Total: -65.68 3.48 -62.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252546111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.422 kcal (2) G-P(sol) polarization free energy of solvation -65.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds