Wall clock time and date at job start Mon Mar 30 2020 02:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.52994 * 109.47449 * 239.99751 * 2 1 3 5 5 C 1.52999 * 109.47736 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46741 * 59.99767 * 5 4 2 7 7 C 1.53003 * 109.47618 * 300.00188 * 6 5 4 8 8 O 1.42894 * 109.47484 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47205 * 300.00415 * 7 6 5 10 10 H 1.08001 * 120.00113 * 54.15828 * 9 7 6 11 11 C 1.37878 * 120.00055 * 234.16179 * 9 7 6 12 12 N 1.31508 * 120.00428 * 168.39387 * 11 9 7 13 13 Si 1.86800 * 119.99598 * 348.39619 * 11 9 7 14 14 H 1.48497 * 109.47455 * 66.13669 * 13 11 9 15 15 H 1.48501 * 109.46864 * 186.13489 * 13 11 9 16 16 H 1.48498 * 109.47171 * 306.13070 * 13 11 9 17 17 C 1.52998 * 109.47068 * 119.99493 * 2 1 3 18 18 H 1.09002 * 109.47098 * 60.00710 * 17 2 1 19 19 C 1.53003 * 109.47618 * 300.00037 * 17 2 1 20 20 H 1.09006 * 109.47335 * 299.99899 * 1 2 3 21 21 H 1.08999 * 109.47064 * 60.00247 * 1 2 3 22 22 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47181 * 300.00190 * 4 2 1 24 24 H 1.09006 * 109.46660 * 59.99742 * 4 2 1 25 25 H 1.08998 * 109.47609 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46621 * 300.00337 * 5 4 2 27 27 H 1.09001 * 109.47292 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.47465 * 60.00478 * 6 5 4 29 29 H 0.96705 * 113.99984 * 46.80708 * 8 7 6 30 30 H 0.97004 * 120.00309 * 180.02562 * 12 11 9 31 31 H 1.08993 * 109.46711 * 300.00239 * 19 17 2 32 32 H 1.09001 * 109.46574 * 59.99823 * 19 17 2 33 33 H 1.08992 * 109.47085 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 8 4.0468 -1.3938 2.4158 9 6 4.0723 0.7007 1.2487 10 1 3.8909 1.3373 0.3952 11 6 4.7629 1.1882 2.3379 12 7 5.3957 2.3381 2.2544 13 14 4.7999 0.2154 3.9321 14 1 5.5429 -1.0529 3.7210 15 1 5.4758 1.0156 4.9847 16 1 3.4105 -0.0899 4.3580 17 6 2.0399 -0.7211 1.2493 18 1 1.6767 -1.7488 1.2493 19 6 1.5300 0.0002 2.4986 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7489 -1.2491 24 1 1.6766 -0.2074 -2.1392 25 1 3.9334 -1.2342 -2.1397 26 1 3.9329 0.3071 -1.2498 27 1 5.1705 -1.4408 -0.0002 28 1 3.7175 -2.4694 0.0001 29 1 4.9888 -1.6105 2.3879 30 1 5.8819 2.6809 3.0206 31 1 1.8933 1.0277 2.4984 32 1 0.4400 0.0001 2.4985 33 1 1.8937 -0.5134 3.3885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252563125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:12 Heat of formation + Delta-G solvation = -65.273323 kcal Electronic energy + Delta-G solvation = -14083.062817 eV Core-core repulsion = 11915.164296 eV Total energy + Delta-G solvation = -2167.898521 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.02034 -35.43457 -32.25954 -32.11841 -30.11241 -26.55471 -25.37674 -24.20030 -20.68975 -20.27049 -18.70954 -16.87737 -15.45298 -14.63504 -14.55425 -14.00437 -13.89230 -12.85057 -12.64205 -12.42414 -12.08253 -11.78032 -11.53682 -11.16169 -11.05213 -10.85298 -10.55851 -10.22671 -10.14356 -9.93679 -9.83870 -9.45016 -9.10035 -8.85172 -8.31459 -8.02186 -6.00410 -4.05123 3.44725 3.66477 3.84955 4.65366 5.10812 5.32352 5.42958 5.57730 5.77691 5.86181 5.95762 6.14570 6.17123 6.23468 6.33081 6.38576 6.46751 6.49467 6.55587 6.61626 6.74572 6.83978 6.98857 7.05711 7.11752 7.22373 7.37227 7.46475 7.78077 8.31242 8.71600 8.97614 9.63301 11.08373 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.016510 C = 0.015227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.791036 B = 1695.517255 C = 1838.396794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.109 4.109 5 C -0.108 4.108 6 C -0.131 4.131 7 C 0.218 3.782 8 O -0.558 6.558 9 C -0.540 4.540 10 H 0.082 0.918 11 C 0.055 3.945 12 N -0.898 5.898 13 Si 0.991 3.009 14 H -0.315 1.315 15 H -0.348 1.348 16 H -0.282 1.282 17 C -0.059 4.059 18 H 0.041 0.959 19 C -0.140 4.140 20 H 0.055 0.945 21 H 0.045 0.955 22 H 0.044 0.956 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.076 0.924 27 H 0.054 0.946 28 H 0.038 0.962 29 H 0.375 0.625 30 H 0.262 0.738 31 H 0.067 0.933 32 H 0.031 0.969 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.743 -6.248 -3.813 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.146 4.146 5 C -0.146 4.146 6 C -0.169 4.169 7 C 0.179 3.821 8 O -0.370 6.370 9 C -0.577 4.577 10 H 0.100 0.900 11 C -0.147 4.147 12 N -0.534 5.534 13 Si 0.837 3.163 14 H -0.248 1.248 15 H -0.283 1.283 16 H -0.210 1.210 17 C -0.078 4.078 18 H 0.060 0.940 19 C -0.197 4.197 20 H 0.074 0.926 21 H 0.064 0.936 22 H 0.063 0.937 23 H 0.067 0.933 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.227 0.773 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.275 -6.012 -3.599 9.406 hybrid contribution 0.670 -0.536 0.593 1.043 sum -5.605 -6.548 -3.006 9.128 Atomic orbital electron populations 1.21889 0.96734 1.00704 1.00951 1.21063 0.93590 1.01245 0.93980 0.89730 1.21549 0.96223 0.99454 0.97390 1.21386 0.94917 1.02007 0.96265 1.22181 1.00030 0.97435 0.97239 1.19441 0.90611 0.91541 0.80473 1.86099 1.30999 1.77911 1.42026 1.21222 1.36178 0.95892 1.04399 0.89972 1.25302 0.93708 0.95566 1.00153 1.70007 1.31385 1.20889 1.31114 0.85097 0.77160 0.74334 0.79726 1.24787 1.28328 1.21006 1.21035 0.95812 0.96754 0.94234 0.94035 1.21888 0.97612 1.02368 0.97811 0.92592 0.93618 0.93670 0.93280 0.93152 0.93911 0.90552 0.92718 0.94294 0.77319 0.92884 0.91375 0.94977 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.84 37.16 0.33 -1.93 16 2 C -0.08 -1.48 2.02 -90.63 -0.18 -1.67 16 3 H 0.08 1.77 6.74 -51.93 -0.35 1.42 16 4 C -0.11 -1.83 5.20 -26.73 -0.14 -1.97 16 5 C -0.11 -1.98 5.69 -26.73 -0.15 -2.13 16 6 C -0.13 -2.60 4.94 -26.73 -0.13 -2.73 16 7 C 0.22 4.92 0.74 -91.74 -0.07 4.85 16 8 O -0.56 -12.79 7.45 -35.23 -0.26 -13.05 16 9 C -0.54 -14.23 6.18 -34.44 -0.21 -14.44 16 10 H 0.08 2.34 5.96 -52.49 -0.31 2.03 16 11 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -27.10 13.96 55.43 0.77 -26.33 16 13 Si 0.99 25.02 23.81 -169.99 -4.05 20.97 16 14 H -0.31 -7.40 5.45 56.52 0.31 -7.09 16 15 H -0.35 -9.21 7.11 56.52 0.40 -8.81 16 16 H -0.28 -7.12 5.17 56.52 0.29 -6.83 16 17 C -0.06 -1.22 1.77 -90.59 -0.16 -1.38 16 18 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 19 C -0.14 -2.97 7.56 37.16 0.28 -2.69 16 20 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 21 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 26 H 0.08 1.57 6.51 -51.93 -0.34 1.23 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.37 8.04 6.35 45.56 0.29 8.33 16 30 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 31 H 0.07 1.59 7.21 -51.93 -0.37 1.22 16 32 H 0.03 0.58 6.43 -51.93 -0.33 0.25 16 33 H 0.05 1.21 5.71 -51.93 -0.30 0.91 16 LS Contribution 236.14 15.07 3.56 3.56 Total: -1.00 -29.01 236.14 -5.28 -34.30 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.77 Total: 3.20 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -0.54 Total: -22.65 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.77 Total: -26.33 kcal Atomic # 8 Polarization: -12.79 SS G_CDS: -0.26 Total: -13.05 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -4.05 Total: 20.97 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -29.01 -5.28 -34.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252563125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.976 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds