Wall clock time and date at job start Mon Mar 30 2020 02:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47084 * 2 1 4 4 C 1.52994 * 109.47449 * 239.99751 * 2 1 3 5 5 C 1.52999 * 109.47736 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46741 * 59.99767 * 5 4 2 7 7 C 1.53003 * 109.47618 * 300.00188 * 6 5 4 8 8 O 1.42894 * 109.47484 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.47205 * 300.00415 * 7 6 5 10 10 H 1.08001 * 120.00113 * 54.15828 * 9 7 6 11 11 C 1.37878 * 120.00055 * 234.16179 * 9 7 6 12 12 N 1.31508 * 120.00428 * 168.39387 * 11 9 7 13 13 Si 1.86800 * 119.99598 * 348.39619 * 11 9 7 14 14 H 1.48497 * 109.47455 * 66.13669 * 13 11 9 15 15 H 1.48501 * 109.46864 * 186.13489 * 13 11 9 16 16 H 1.48498 * 109.47171 * 306.13070 * 13 11 9 17 17 C 1.52998 * 109.47068 * 119.99493 * 2 1 3 18 18 H 1.09002 * 109.47098 * 60.00710 * 17 2 1 19 19 C 1.53003 * 109.47618 * 300.00037 * 17 2 1 20 20 H 1.09006 * 109.47335 * 299.99899 * 1 2 3 21 21 H 1.08999 * 109.47064 * 60.00247 * 1 2 3 22 22 H 1.09002 * 109.47213 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47181 * 300.00190 * 4 2 1 24 24 H 1.09006 * 109.46660 * 59.99742 * 4 2 1 25 25 H 1.08998 * 109.47609 * 180.02562 * 5 4 2 26 26 H 1.09002 * 109.46621 * 300.00337 * 5 4 2 27 27 H 1.09001 * 109.47292 * 180.02562 * 6 5 4 28 28 H 1.09004 * 109.47465 * 60.00478 * 6 5 4 29 29 H 0.96705 * 113.99984 * 46.80708 * 8 7 6 30 30 H 0.97004 * 120.00309 * 180.02562 * 12 11 9 31 31 H 1.08993 * 109.46711 * 300.00239 * 19 17 2 32 32 H 1.09001 * 109.46574 * 59.99823 * 19 17 2 33 33 H 1.08992 * 109.47085 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7207 -1.2495 6 6 4.0805 -1.4415 -0.0002 7 6 3.5705 -0.7202 1.2490 8 8 4.0468 -1.3938 2.4158 9 6 4.0723 0.7007 1.2487 10 1 3.8909 1.3373 0.3952 11 6 4.7629 1.1882 2.3379 12 7 5.3957 2.3381 2.2544 13 14 4.7999 0.2154 3.9321 14 1 5.5429 -1.0529 3.7210 15 1 5.4758 1.0156 4.9847 16 1 3.4105 -0.0899 4.3580 17 6 2.0399 -0.7211 1.2493 18 1 1.6767 -1.7488 1.2493 19 6 1.5300 0.0002 2.4986 20 1 -0.3634 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6767 -1.7489 -1.2491 24 1 1.6766 -0.2074 -2.1392 25 1 3.9334 -1.2342 -2.1397 26 1 3.9329 0.3071 -1.2498 27 1 5.1705 -1.4408 -0.0002 28 1 3.7175 -2.4694 0.0001 29 1 4.9888 -1.6105 2.3879 30 1 5.8819 2.6809 3.0206 31 1 1.8933 1.0277 2.4984 32 1 0.4400 0.0001 2.4985 33 1 1.8937 -0.5134 3.3885 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252563125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:12 Heat of formation + Delta-G solvation = -84.934672 kcal Electronic energy + Delta-G solvation = -14083.915398 eV Core-core repulsion = 11915.164296 eV Total energy + Delta-G solvation = -2168.751101 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.68612 -37.11743 -34.26104 -33.78542 -31.74348 -28.22161 -27.09595 -25.92201 -22.26924 -21.81690 -20.51500 -18.72065 -17.47929 -16.49374 -16.26191 -15.48591 -15.39261 -14.61188 -14.30300 -14.16568 -13.88059 -13.34651 -13.16670 -12.80094 -12.60510 -12.45984 -12.15461 -12.07926 -11.94124 -11.54276 -11.49963 -11.08431 -10.76607 -10.71680 -10.27609 -9.93280 -8.20430 -6.24437 1.40622 1.59546 1.81417 2.53838 3.12560 3.55521 3.99551 4.07558 4.26869 4.40521 4.46400 4.66257 4.72240 4.79043 4.86635 4.87984 5.00993 5.03111 5.10122 5.15957 5.22992 5.31029 5.46602 5.47939 5.53522 5.64332 5.71661 5.74218 5.90919 6.26322 6.72836 6.90265 7.47138 8.92150 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.038623 B = 0.016510 C = 0.015227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.791036 B = 1695.517255 C = 1838.396794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.080 4.080 3 H 0.046 0.954 4 C -0.104 4.104 5 C -0.108 4.108 6 C -0.128 4.128 7 C 0.209 3.791 8 O -0.560 6.560 9 C -0.519 4.519 10 H 0.050 0.950 11 C 0.001 3.999 12 N -0.949 5.949 13 Si 1.038 2.962 14 H -0.286 1.286 15 H -0.368 1.368 16 H -0.282 1.282 17 C -0.060 4.060 18 H 0.062 0.938 19 C -0.135 4.135 20 H 0.051 0.949 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.380 0.620 30 H 0.258 0.742 31 H 0.034 0.966 32 H 0.062 0.938 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.314 -8.800 -4.678 12.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.099 4.099 3 H 0.065 0.935 4 C -0.141 4.141 5 C -0.146 4.146 6 C -0.166 4.166 7 C 0.171 3.829 8 O -0.374 6.374 9 C -0.557 4.557 10 H 0.068 0.932 11 C -0.195 4.195 12 N -0.589 5.589 13 Si 0.883 3.117 14 H -0.217 1.217 15 H -0.306 1.306 16 H -0.210 1.210 17 C -0.079 4.079 18 H 0.080 0.920 19 C -0.192 4.192 20 H 0.070 0.930 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.091 0.909 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.233 0.767 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.854 -8.601 -4.486 12.481 hybrid contribution 1.123 0.288 0.783 1.399 sum -6.731 -8.313 -3.703 11.319 Atomic orbital electron populations 1.21830 0.94010 1.02169 1.01690 1.21022 0.95882 0.99008 0.94000 0.93520 1.21536 0.94729 1.00748 0.97113 1.21377 0.96401 1.00071 0.96741 1.22101 0.99693 0.98591 0.96211 1.19572 0.92218 0.89370 0.81786 1.86062 1.31528 1.77398 1.42383 1.21468 1.34071 0.97671 1.02450 0.93206 1.26005 0.94130 0.96323 1.03039 1.70137 1.33898 1.23139 1.31727 0.84225 0.77230 0.74048 0.76214 1.21666 1.30562 1.20966 1.21064 0.93962 0.97989 0.94881 0.91993 1.21821 0.99622 1.00102 0.97700 0.93017 0.91916 0.91709 0.90942 0.91279 0.91101 0.93997 0.93463 0.91599 0.76712 0.93335 0.94716 0.91879 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.84 71.98 0.64 -3.20 16 2 C -0.08 -2.79 2.02 -10.80 -0.02 -2.82 16 3 H 0.05 1.97 6.74 -2.39 -0.02 1.95 16 4 C -0.10 -3.12 5.20 30.59 0.16 -2.96 16 5 C -0.11 -3.72 5.69 30.59 0.17 -3.54 16 6 C -0.13 -4.76 4.94 30.59 0.15 -4.60 16 7 C 0.21 9.13 0.74 -11.52 -0.01 9.12 16 8 O -0.56 -24.44 7.45 -148.98 -1.11 -25.55 16 9 C -0.52 -27.89 6.18 25.60 0.16 -27.73 16 10 H 0.05 2.98 5.96 -2.91 -0.02 2.96 16 11 C 0.00 0.07 5.46 84.66 0.46 0.53 16 12 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 13 Si 1.04 51.78 23.81 68.60 1.63 53.42 16 14 H -0.29 -12.65 5.45 99.48 0.54 -12.11 16 15 H -0.37 -19.54 7.11 99.48 0.71 -18.84 16 16 H -0.28 -13.90 5.17 99.48 0.51 -13.39 16 17 C -0.06 -2.33 1.77 -10.77 -0.02 -2.35 16 18 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 19 C -0.14 -5.57 7.56 71.98 0.54 -5.02 16 20 H 0.05 1.44 6.43 -2.38 -0.02 1.43 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.04 1.71 6.51 -2.39 -0.02 1.70 16 27 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 29 H 0.38 15.35 6.35 -74.05 -0.47 14.88 16 30 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 31 H 0.03 1.62 7.21 -2.39 -0.02 1.61 16 32 H 0.06 2.16 6.43 -2.39 -0.02 2.14 16 33 H 0.04 1.70 5.71 -2.39 -0.01 1.68 16 Total: -1.00 -63.75 236.14 3.32 -60.43 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.26 Total: 13.69 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 2.24 Total: -42.58 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.30 Total: -59.41 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -1.11 Total: -25.55 kcal Atomic # 14 Polarization: 51.78 SS G_CDS: 1.63 Total: 53.42 kcal Total: -63.75 3.32 -60.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252563125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.503 kcal (2) G-P(sol) polarization free energy of solvation -63.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds