Wall clock time and date at job start Mon Mar 30 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46638 * 2 1 4 4 C 1.52996 * 109.46899 * 240.00309 * 2 1 3 5 5 C 1.53004 * 109.46899 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47000 * 59.99993 * 5 4 2 7 7 C 1.53005 * 109.47190 * 299.99566 * 6 5 4 8 8 O 1.42902 * 109.47182 * 300.00494 * 7 6 5 9 9 C 1.50701 * 109.47000 * 180.02562 * 7 6 5 10 10 H 1.08002 * 119.99761 * 239.99828 * 9 7 6 11 11 C 1.37871 * 119.99694 * 60.28391 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48504 * 109.47266 * 60.00049 * 13 11 9 15 15 H 1.48504 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99456 * 13 11 9 17 17 C 1.52997 * 109.47000 * 120.00302 * 2 1 3 18 18 H 1.09000 * 109.47849 * 59.99917 * 17 2 1 19 19 C 1.53005 * 109.47190 * 299.99566 * 17 2 1 20 20 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47285 * 299.99853 * 1 2 3 22 22 H 1.08991 * 109.47547 * 60.00171 * 1 2 3 23 23 H 1.08996 * 109.47637 * 59.99854 * 4 2 1 24 24 H 1.09009 * 109.47102 * 299.99370 * 4 2 1 25 25 H 1.08995 * 109.46638 * 299.99690 * 5 4 2 26 26 H 1.09007 * 109.46700 * 179.97438 * 5 4 2 27 27 H 1.09004 * 109.46774 * 180.02562 * 6 5 4 28 28 H 1.08995 * 109.47672 * 60.00331 * 6 5 4 29 29 H 0.96699 * 114.00104 * 299.99850 * 8 7 6 30 30 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 31 31 H 1.08995 * 109.47438 * 300.00908 * 19 17 2 32 32 H 1.09004 * 109.46658 * 60.00669 * 19 17 2 33 33 H 1.08996 * 109.47069 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0794 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2496 8 8 4.0463 0.6250 1.2499 9 6 4.0718 -1.4327 2.4800 10 1 3.3700 -1.8431 3.1909 11 6 5.4273 -1.5536 2.7010 12 7 6.2820 -1.0538 1.8353 13 14 6.0500 -2.4275 4.2301 14 1 5.5595 -3.8292 4.2335 15 1 7.5350 -2.4232 4.2325 16 1 5.5506 -1.7253 5.4395 17 6 2.0400 -0.7213 1.2492 18 1 1.6767 -1.7490 1.2493 19 6 1.5301 0.0000 2.4985 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 1.6767 -0.2074 -2.1392 24 1 1.6767 -1.7489 -1.2493 25 1 3.9336 0.3058 -1.2487 26 1 3.9333 -1.2360 -2.1388 27 1 5.1695 -1.4434 0.0007 28 1 3.7158 -2.4709 0.0000 29 1 5.0103 0.7010 1.2500 30 1 7.2356 -1.1386 1.9910 31 1 1.8933 1.0276 2.4985 32 1 0.4400 -0.0001 2.4985 33 1 1.8938 -0.5137 3.3884 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252563127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:14 Heat of formation + Delta-G solvation = -83.189824 kcal Electronic energy + Delta-G solvation = -13890.076561 eV Core-core repulsion = 11721.401122 eV Total energy + Delta-G solvation = -2168.675439 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.56497 -34.46389 -32.00325 -31.94340 -29.95036 -26.42681 -25.12483 -24.09131 -20.36044 -19.91659 -18.45479 -16.68902 -14.99738 -14.38518 -13.97194 -13.72113 -13.56475 -13.05270 -12.32068 -11.99691 -11.88349 -11.36403 -11.32826 -10.97937 -10.91670 -10.76214 -10.55049 -10.41885 -10.06761 -9.94174 -9.64824 -9.50112 -9.37306 -8.62360 -8.44322 -7.80945 -6.06815 -4.17096 3.28314 3.33050 3.36240 4.37751 5.16450 5.51265 5.56560 5.66356 5.98653 6.06816 6.21201 6.24288 6.33104 6.41906 6.44735 6.54007 6.62685 6.70875 6.76192 6.82361 6.88662 7.03967 7.21698 7.25004 7.38973 7.43670 7.71727 7.84805 8.12138 8.32687 8.84856 9.50880 9.69753 10.95165 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046621 B = 0.013291 C = 0.011571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.447930 B = 2106.242645 C = 2419.167861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.072 0.928 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.138 4.138 7 C 0.259 3.741 8 O -0.589 6.589 9 C -0.529 4.529 10 H 0.058 0.942 11 C 0.068 3.932 12 N -0.900 5.900 13 Si 0.894 3.106 14 H -0.278 1.278 15 H -0.287 1.287 16 H -0.277 1.277 17 C -0.062 4.062 18 H 0.057 0.943 19 C -0.131 4.131 20 H 0.046 0.954 21 H 0.053 0.947 22 H 0.042 0.958 23 H 0.043 0.957 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.091 0.909 28 H 0.038 0.962 29 H 0.376 0.624 30 H 0.265 0.735 31 H 0.053 0.947 32 H 0.030 0.970 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.876 0.605 -3.202 6.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 H 0.090 0.910 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.176 4.176 7 C 0.220 3.780 8 O -0.397 6.397 9 C -0.567 4.567 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.541 5.541 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.081 4.081 18 H 0.076 0.924 19 C -0.188 4.188 20 H 0.065 0.935 21 H 0.072 0.928 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.056 0.944 27 H 0.109 0.891 28 H 0.056 0.944 29 H 0.226 0.774 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.329 0.748 -3.228 7.144 hybrid contribution 1.053 -0.761 0.803 1.528 sum -5.275 -0.013 -2.425 5.806 Atomic orbital electron populations 1.21916 0.97031 1.00840 1.00604 1.21114 0.93445 1.00470 0.95295 0.91003 1.21544 0.96820 0.99403 0.96740 1.21525 0.94453 1.01006 0.98338 1.22187 1.03754 0.97485 0.94164 1.18503 0.87901 0.80181 0.91424 1.86081 1.27476 1.28897 1.97268 1.21801 0.91776 1.35783 1.07369 0.92352 1.24984 0.96870 0.94984 0.96441 1.69588 1.02437 1.46737 1.35367 0.86621 0.77507 0.80105 0.83519 1.20323 1.21289 1.20238 1.21022 0.96527 0.97499 0.93012 0.92420 1.21694 0.97346 1.01203 0.98555 0.93471 0.92810 0.93884 0.93803 0.93178 0.92353 0.94427 0.89073 0.94368 0.77404 0.92492 0.92801 0.95151 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.84 37.16 0.33 -1.97 16 2 C -0.08 -1.60 2.10 -90.62 -0.19 -1.79 16 3 H 0.07 1.47 7.68 -51.93 -0.40 1.07 16 4 C -0.11 -1.95 5.20 -26.73 -0.14 -2.09 16 5 C -0.12 -2.34 5.78 -26.73 -0.15 -2.50 16 6 C -0.14 -3.25 4.70 -26.73 -0.13 -3.38 16 7 C 0.26 6.36 0.35 -91.79 -0.03 6.33 16 8 O -0.59 -15.07 10.94 -35.23 -0.39 -15.46 16 9 C -0.53 -14.19 7.51 -34.44 -0.26 -14.45 16 10 H 0.06 1.57 6.71 -52.49 -0.35 1.21 16 11 C 0.07 1.81 5.22 -17.82 -0.09 1.72 16 12 N -0.90 -24.20 9.68 55.43 0.54 -23.67 16 13 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 C -0.06 -1.33 1.57 -90.64 -0.14 -1.47 16 18 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 19 C -0.13 -2.68 8.44 37.16 0.31 -2.37 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 21 H 0.05 0.81 6.43 -51.93 -0.33 0.48 16 22 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 25 H 0.06 1.23 7.68 -51.93 -0.40 0.83 16 26 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.09 2.37 6.08 -51.93 -0.32 2.05 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.38 10.00 7.13 45.56 0.32 10.32 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.05 1.15 7.68 -51.93 -0.40 0.75 16 32 H 0.03 0.53 6.43 -51.93 -0.33 0.19 16 33 H 0.06 1.21 6.62 -51.93 -0.34 0.87 16 LS Contribution 248.93 15.07 3.75 3.75 Total: -1.00 -26.52 248.93 -6.26 -32.77 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.65 Total: 8.63 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: -0.49 Total: -21.98 kcal Atomic # 7 Polarization: -24.20 SS G_CDS: 0.54 Total: -23.67 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.39 Total: -15.46 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -26.52 -6.26 -32.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252563127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.416 kcal (2) G-P(sol) polarization free energy of solvation -26.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds