Wall clock time and date at job start Mon Mar 30 2020 02:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46638 * 2 1 4 4 C 1.52996 * 109.46899 * 240.00309 * 2 1 3 5 5 C 1.53004 * 109.46899 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47000 * 59.99993 * 5 4 2 7 7 C 1.53005 * 109.47190 * 299.99566 * 6 5 4 8 8 O 1.42902 * 109.47182 * 300.00494 * 7 6 5 9 9 C 1.50701 * 109.47000 * 180.02562 * 7 6 5 10 10 H 1.08002 * 119.99761 * 239.99828 * 9 7 6 11 11 C 1.37871 * 119.99694 * 60.28391 * 9 7 6 12 12 N 1.31514 * 120.00482 * 359.71466 * 11 9 7 13 13 Si 1.86801 * 119.99746 * 179.72062 * 11 9 7 14 14 H 1.48504 * 109.47266 * 60.00049 * 13 11 9 15 15 H 1.48504 * 109.46970 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47383 * 299.99456 * 13 11 9 17 17 C 1.52997 * 109.47000 * 120.00302 * 2 1 3 18 18 H 1.09000 * 109.47849 * 59.99917 * 17 2 1 19 19 C 1.53005 * 109.47190 * 299.99566 * 17 2 1 20 20 H 1.09000 * 109.46887 * 180.02562 * 1 2 3 21 21 H 1.08998 * 109.47285 * 299.99853 * 1 2 3 22 22 H 1.08991 * 109.47547 * 60.00171 * 1 2 3 23 23 H 1.08996 * 109.47637 * 59.99854 * 4 2 1 24 24 H 1.09009 * 109.47102 * 299.99370 * 4 2 1 25 25 H 1.08995 * 109.46638 * 299.99690 * 5 4 2 26 26 H 1.09007 * 109.46700 * 179.97438 * 5 4 2 27 27 H 1.09004 * 109.46774 * 180.02562 * 6 5 4 28 28 H 1.08995 * 109.47672 * 60.00331 * 6 5 4 29 29 H 0.96699 * 114.00104 * 299.99850 * 8 7 6 30 30 H 0.96995 * 120.00207 * 179.97438 * 12 11 9 31 31 H 1.08995 * 109.47438 * 300.00908 * 19 17 2 32 32 H 1.09004 * 109.46658 * 60.00669 * 19 17 2 33 33 H 1.08996 * 109.47069 * 180.02562 * 19 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7217 -1.2489 6 6 4.0794 -1.4434 0.0002 7 6 3.5695 -0.7222 1.2496 8 8 4.0463 0.6250 1.2499 9 6 4.0718 -1.4327 2.4800 10 1 3.3700 -1.8431 3.1909 11 6 5.4273 -1.5536 2.7010 12 7 6.2820 -1.0538 1.8353 13 14 6.0500 -2.4275 4.2301 14 1 5.5595 -3.8292 4.2335 15 1 7.5350 -2.4232 4.2325 16 1 5.5506 -1.7253 5.4395 17 6 2.0400 -0.7213 1.2492 18 1 1.6767 -1.7490 1.2493 19 6 1.5301 0.0000 2.4985 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 1.6767 -0.2074 -2.1392 24 1 1.6767 -1.7489 -1.2493 25 1 3.9336 0.3058 -1.2487 26 1 3.9333 -1.2360 -2.1388 27 1 5.1695 -1.4434 0.0007 28 1 3.7158 -2.4709 0.0000 29 1 5.0103 0.7010 1.2500 30 1 7.2356 -1.1386 1.9910 31 1 1.8933 1.0276 2.4985 32 1 0.4400 -0.0001 2.4985 33 1 1.8938 -0.5137 3.3884 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252563127.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:14 Heat of formation + Delta-G solvation = -98.939849 kcal Electronic energy + Delta-G solvation = -13890.759533 eV Core-core repulsion = 11721.401122 eV Total energy + Delta-G solvation = -2169.358412 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.29230 -36.26154 -34.02488 -33.62494 -31.67069 -28.15474 -26.84186 -25.80637 -22.04709 -21.60593 -20.17502 -18.68029 -16.99737 -16.20368 -15.60655 -15.48452 -15.12014 -14.76340 -13.97182 -13.73732 -13.55451 -13.09233 -12.93765 -12.79377 -12.65317 -12.35890 -12.27210 -12.13778 -11.84964 -11.74195 -11.39064 -11.16873 -11.03631 -10.52660 -10.32681 -9.76470 -8.09237 -6.27051 1.40274 1.41336 1.48375 2.41274 3.10375 4.00467 4.08195 4.14150 4.40961 4.51412 4.54267 4.73153 4.83669 4.89992 4.90314 4.99085 5.06691 5.12223 5.20307 5.22354 5.35965 5.47668 5.50813 5.55821 5.64411 5.68521 5.78852 5.99355 6.17769 6.32969 6.79097 7.43552 7.61460 8.89613 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.046621 B = 0.013291 C = 0.011571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.447930 B = 2106.242645 C = 2419.167861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.082 4.082 3 H 0.053 0.947 4 C -0.104 4.104 5 C -0.111 4.111 6 C -0.134 4.134 7 C 0.248 3.752 8 O -0.592 6.592 9 C -0.552 4.552 10 H 0.050 0.950 11 C 0.026 3.974 12 N -0.914 5.914 13 Si 0.950 3.050 14 H -0.274 1.274 15 H -0.283 1.283 16 H -0.277 1.277 17 C -0.065 4.065 18 H 0.056 0.944 19 C -0.124 4.124 20 H 0.056 0.944 21 H 0.057 0.943 22 H 0.064 0.936 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.045 0.955 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.030 0.970 29 H 0.368 0.632 30 H 0.265 0.735 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.265 0.384 -3.717 8.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.100 4.100 3 H 0.071 0.929 4 C -0.141 4.141 5 C -0.149 4.149 6 C -0.172 4.172 7 C 0.209 3.791 8 O -0.400 6.400 9 C -0.590 4.590 10 H 0.069 0.931 11 C -0.173 4.173 12 N -0.555 5.555 13 Si 0.776 3.224 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.202 1.202 17 C -0.083 4.083 18 H 0.074 0.926 19 C -0.181 4.181 20 H 0.075 0.925 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.049 0.951 29 H 0.216 0.784 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.730 0.526 -3.747 8.606 hybrid contribution 1.511 -0.692 0.968 1.924 sum -6.219 -0.166 -2.779 6.813 Atomic orbital electron populations 1.21846 0.94018 1.01909 1.01953 1.21058 0.95941 0.98885 0.94166 0.92868 1.21536 0.94794 1.00254 0.97557 1.21459 0.96403 0.99832 0.97177 1.22044 1.01922 0.97446 0.95787 1.18721 0.90041 0.79373 0.90986 1.86084 1.26691 1.29871 1.97310 1.22108 0.92118 1.36420 1.08373 0.93148 1.25634 0.97113 0.95680 0.98854 1.69697 1.02460 1.47072 1.36312 0.85749 0.77057 0.79127 0.80451 1.19962 1.20817 1.20240 1.21024 0.94340 0.97959 0.94984 0.92604 1.21614 0.99376 0.99724 0.97375 0.92493 0.92414 0.91702 0.90968 0.92327 0.93591 0.92678 0.91975 0.95075 0.78398 0.92521 0.94291 0.91835 0.94404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 8.84 71.98 0.64 -3.23 16 2 C -0.08 -2.91 2.10 -10.79 -0.02 -2.94 16 3 H 0.05 2.09 7.68 -2.39 -0.02 2.07 16 4 C -0.10 -3.49 5.20 30.59 0.16 -3.33 16 5 C -0.11 -4.37 5.78 30.59 0.18 -4.19 16 6 C -0.13 -6.35 4.70 30.59 0.14 -6.21 16 7 C 0.25 12.25 0.35 -11.55 0.00 12.24 16 8 O -0.59 -30.85 10.94 -148.98 -1.63 -32.48 16 9 C -0.55 -30.00 7.51 25.60 0.19 -29.80 16 10 H 0.05 2.75 6.71 -2.91 -0.02 2.73 16 11 C 0.03 1.41 5.22 84.65 0.44 1.85 16 12 N -0.91 -49.94 9.68 21.45 0.21 -49.74 16 13 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 14 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 C -0.06 -2.71 1.57 -10.81 -0.02 -2.73 16 18 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 19 C -0.12 -4.97 8.44 71.98 0.61 -4.36 16 20 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 21 H 0.06 1.54 6.43 -2.39 -0.02 1.52 16 22 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 25 H 0.05 1.90 7.68 -2.39 -0.02 1.88 16 26 H 0.05 1.94 8.14 -2.38 -0.02 1.93 16 27 H 0.06 3.29 6.08 -2.38 -0.01 3.28 16 28 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.37 20.12 7.13 -74.06 -0.53 19.59 16 30 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 31 H 0.04 1.64 7.68 -2.39 -0.02 1.62 16 32 H 0.06 2.08 6.43 -2.38 -0.02 2.07 16 33 H 0.04 1.62 6.62 -2.39 -0.02 1.60 16 Total: -1.00 -56.29 248.93 3.47 -52.82 By element: Atomic # 1 Polarization: 26.27 SS G_CDS: 0.55 Total: 26.82 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 2.31 Total: -42.69 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.21 Total: -49.74 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -1.63 Total: -32.48 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -56.29 3.47 -52.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252563127.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.123 kcal (2) G-P(sol) polarization free energy of solvation -56.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds