Wall clock time and date at job start Mon Mar 30 2020 02:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47379 * 2 1 4 4 C 1.52995 * 109.46963 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.47157 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.47060 * 300.00108 * 5 4 2 7 7 C 1.53005 * 109.47299 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47228 * 60.00095 * 5 4 2 9 9 C 1.53005 * 109.46958 * 300.00181 * 8 5 4 10 10 O 1.42895 * 109.46676 * 179.97438 * 9 8 5 11 11 C 1.50701 * 109.47102 * 299.99768 * 9 8 5 12 12 H 1.08001 * 119.99668 * 0.04496 * 11 9 8 13 13 C 1.37868 * 119.99848 * 180.02562 * 11 9 8 14 14 N 1.31518 * 120.00124 * 6.23078 * 13 11 9 15 15 Si 1.86800 * 119.99938 * 186.22878 * 13 11 9 16 16 H 1.48501 * 109.47003 * 84.96577 * 15 13 11 17 17 H 1.48498 * 109.47428 * 324.96662 * 15 13 11 18 18 H 1.48501 * 109.47398 * 204.96462 * 15 13 11 19 19 C 1.53003 * 109.47105 * 60.00166 * 9 8 5 20 20 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46873 * 300.00233 * 1 2 3 22 22 H 1.08993 * 109.46989 * 59.99770 * 1 2 3 23 23 H 1.08993 * 109.46946 * 60.00367 * 4 2 1 24 24 H 1.09004 * 109.47223 * 300.00312 * 4 2 1 25 25 H 1.09004 * 109.47098 * 300.00018 * 7 5 4 26 26 H 1.09002 * 109.46868 * 59.99794 * 7 5 4 27 27 H 1.08997 * 109.46888 * 180.02562 * 7 5 4 28 28 H 1.09004 * 109.47268 * 180.02562 * 8 5 4 29 29 H 1.09004 * 109.47089 * 60.00031 * 8 5 4 30 30 H 0.96706 * 114.00134 * 179.97438 * 10 9 8 31 31 H 0.97008 * 119.99732 * 180.02562 * 14 13 11 32 32 H 1.08994 * 109.47013 * 59.99502 * 19 9 8 33 33 H 1.09001 * 109.46873 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9337 0.3057 -1.2487 7 6 4.0800 -1.4426 -2.4985 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2496 10 8 4.0449 -1.3965 2.4163 11 6 4.0724 0.6984 1.2499 12 1 4.6930 1.0517 0.4397 13 6 3.7398 1.5472 2.2842 14 7 3.0882 1.0862 3.3295 15 14 4.2148 3.3518 2.2011 16 1 3.1815 4.1012 1.4420 17 1 5.5264 3.4876 1.5180 18 1 4.3141 3.9016 3.5770 19 6 2.0395 -0.7217 1.2493 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6767 -0.2074 -2.1391 24 1 1.6766 -1.7490 -1.2492 25 1 3.7162 -2.4702 -2.4992 26 1 3.7170 -0.9281 -3.3883 27 1 5.1699 -1.4434 -2.4980 28 1 5.1695 -1.4435 0.0008 29 1 3.7158 -2.4710 0.0001 30 1 3.7599 -0.9929 3.2476 31 1 2.8539 1.6835 4.0571 32 1 1.6758 -1.7492 1.2490 33 1 1.6762 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252564275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:36 Heat of formation + Delta-G solvation = -86.910347 kcal Electronic energy + Delta-G solvation = -13832.426590 eV Core-core repulsion = 11663.589817 eV Total energy + Delta-G solvation = -2168.836773 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.45318 -34.65123 -32.66772 -31.91454 -29.07663 -25.95225 -25.27980 -25.00265 -20.31067 -19.67487 -18.76220 -16.34018 -15.06104 -14.47798 -14.09004 -13.95098 -13.44572 -13.13049 -12.29817 -11.92736 -11.76422 -11.55067 -11.45238 -11.21149 -10.97568 -10.71216 -10.62635 -10.42034 -10.19563 -9.85671 -9.65452 -9.48477 -9.28409 -8.82219 -8.41772 -7.86858 -6.09660 -4.15423 3.26367 3.33564 3.36628 4.37729 5.15350 5.47340 5.52973 5.67785 5.88463 5.99048 6.09719 6.18161 6.34435 6.42117 6.44162 6.49577 6.59037 6.66747 6.70380 6.81524 6.89578 6.92611 7.00566 7.23785 7.38496 7.50415 7.64548 7.76000 8.06690 8.34371 8.85374 9.50110 9.72770 10.95394 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030729 B = 0.014915 C = 0.014221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.975845 B = 1876.875827 C = 1968.486474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.080 4.080 3 H 0.078 0.922 4 C -0.100 4.100 5 C -0.084 4.084 6 H 0.078 0.922 7 C -0.144 4.144 8 C -0.088 4.088 9 C 0.247 3.753 10 O -0.599 6.599 11 C -0.522 4.522 12 H 0.059 0.941 13 C 0.069 3.931 14 N -0.900 5.900 15 Si 0.891 3.109 16 H -0.279 1.279 17 H -0.275 1.275 18 H -0.287 1.287 19 C -0.124 4.124 20 H 0.042 0.958 21 H 0.049 0.951 22 H 0.040 0.960 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.381 0.619 31 H 0.265 0.735 32 H 0.022 0.978 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.596 -1.566 -6.441 7.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.138 4.138 5 C -0.103 4.103 6 H 0.096 0.904 7 C -0.202 4.202 8 C -0.126 4.126 9 C 0.207 3.793 10 O -0.409 6.409 11 C -0.560 4.560 12 H 0.077 0.923 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.719 3.281 16 H -0.205 1.205 17 H -0.200 1.200 18 H -0.213 1.213 19 C -0.162 4.162 20 H 0.062 0.938 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.233 0.767 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.393 -1.898 -6.719 7.381 hybrid contribution -0.109 1.438 0.443 1.509 sum -2.501 -0.459 -6.276 6.772 Atomic orbital electron populations 1.21836 0.97423 1.00361 1.00376 1.20985 0.92895 1.01083 0.94923 0.90323 1.21572 0.95374 0.99414 0.97400 1.21032 0.95173 1.00469 0.93580 0.90355 1.21858 1.00496 1.00001 0.97823 1.21364 0.99548 0.97287 0.94369 1.18646 0.88810 0.89575 0.82243 1.86080 1.78460 1.58334 1.18013 1.21733 1.31043 0.96286 1.06939 0.92281 1.24959 0.94451 0.98692 0.95098 1.69534 1.41078 1.35670 1.07842 0.86622 0.79005 0.85234 0.77234 1.20541 1.19955 1.21280 1.22085 0.99225 0.96800 0.98097 0.93846 0.93225 0.94048 0.93616 0.93409 0.93484 0.93554 0.93251 0.93150 0.94296 0.76737 0.92466 0.95930 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 9.19 37.16 0.34 -2.17 16 2 C -0.08 -1.65 2.50 -90.62 -0.23 -1.88 16 3 H 0.08 1.79 7.22 -51.93 -0.37 1.41 16 4 C -0.10 -1.83 4.48 -26.73 -0.12 -1.95 16 5 C -0.08 -1.61 2.49 -90.62 -0.23 -1.84 16 6 H 0.08 1.62 6.62 -51.93 -0.34 1.27 16 7 C -0.14 -2.26 9.20 37.16 0.34 -1.92 16 8 C -0.09 -1.95 4.34 -26.73 -0.12 -2.07 16 9 C 0.25 6.21 0.84 -91.77 -0.08 6.13 16 10 O -0.60 -16.31 12.96 -35.23 -0.46 -16.76 16 11 C -0.52 -13.87 6.29 -34.44 -0.22 -14.09 16 12 H 0.06 1.57 6.72 -52.49 -0.35 1.22 16 13 C 0.07 1.82 5.19 -17.82 -0.09 1.73 16 14 N -0.90 -24.21 9.75 55.43 0.54 -23.67 16 15 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 C -0.12 -2.91 4.14 -26.73 -0.11 -3.02 16 20 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 22 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.38 10.50 6.93 45.56 0.32 10.82 16 31 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 2.15 6.32 -51.93 -0.33 1.83 16 LS Contribution 253.92 15.07 3.83 3.83 Total: -1.00 -26.97 253.92 -6.48 -33.45 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -4.87 Total: 8.42 kcal Atomic # 6 Polarization: -20.57 SS G_CDS: -0.50 Total: -21.08 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.54 Total: -23.67 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.46 Total: -16.76 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -26.97 -6.48 -33.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252564275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.459 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds