Wall clock time and date at job start Mon Mar 30 2020 02:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47379 * 2 1 4 4 C 1.52995 * 109.46963 * 239.99836 * 2 1 3 5 5 C 1.52999 * 109.47157 * 180.02562 * 4 2 1 6 6 H 1.09004 * 109.47060 * 300.00108 * 5 4 2 7 7 C 1.53005 * 109.47299 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47228 * 60.00095 * 5 4 2 9 9 C 1.53005 * 109.46958 * 300.00181 * 8 5 4 10 10 O 1.42895 * 109.46676 * 179.97438 * 9 8 5 11 11 C 1.50701 * 109.47102 * 299.99768 * 9 8 5 12 12 H 1.08001 * 119.99668 * 0.04496 * 11 9 8 13 13 C 1.37868 * 119.99848 * 180.02562 * 11 9 8 14 14 N 1.31518 * 120.00124 * 6.23078 * 13 11 9 15 15 Si 1.86800 * 119.99938 * 186.22878 * 13 11 9 16 16 H 1.48501 * 109.47003 * 84.96577 * 15 13 11 17 17 H 1.48498 * 109.47428 * 324.96662 * 15 13 11 18 18 H 1.48501 * 109.47398 * 204.96462 * 15 13 11 19 19 C 1.53003 * 109.47105 * 60.00166 * 9 8 5 20 20 H 1.08994 * 109.47379 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46873 * 300.00233 * 1 2 3 22 22 H 1.08993 * 109.46989 * 59.99770 * 1 2 3 23 23 H 1.08993 * 109.46946 * 60.00367 * 4 2 1 24 24 H 1.09004 * 109.47223 * 300.00312 * 4 2 1 25 25 H 1.09004 * 109.47098 * 300.00018 * 7 5 4 26 26 H 1.09002 * 109.46868 * 59.99794 * 7 5 4 27 27 H 1.08997 * 109.46888 * 180.02562 * 7 5 4 28 28 H 1.09004 * 109.47268 * 180.02562 * 8 5 4 29 29 H 1.09004 * 109.47089 * 60.00031 * 8 5 4 30 30 H 0.96706 * 114.00134 * 179.97438 * 10 9 8 31 31 H 0.97008 * 119.99732 * 180.02562 * 14 13 11 32 32 H 1.08994 * 109.47013 * 59.99502 * 19 9 8 33 33 H 1.09001 * 109.46873 * 180.02562 * 19 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7219 -1.2489 6 1 3.9337 0.3057 -1.2487 7 6 4.0800 -1.4426 -2.4985 8 6 4.0795 -1.4435 0.0003 9 6 3.5695 -0.7222 1.2496 10 8 4.0449 -1.3965 2.4163 11 6 4.0724 0.6984 1.2499 12 1 4.6930 1.0517 0.4397 13 6 3.7398 1.5472 2.2842 14 7 3.0882 1.0862 3.3295 15 14 4.2148 3.3518 2.2011 16 1 3.1815 4.1012 1.4420 17 1 5.5264 3.4876 1.5180 18 1 4.3141 3.9016 3.5770 19 6 2.0395 -0.7217 1.2493 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.6767 -0.2074 -2.1391 24 1 1.6766 -1.7490 -1.2492 25 1 3.7162 -2.4702 -2.4992 26 1 3.7170 -0.9281 -3.3883 27 1 5.1699 -1.4434 -2.4980 28 1 5.1695 -1.4435 0.0008 29 1 3.7158 -2.4710 0.0001 30 1 3.7599 -0.9929 3.2476 31 1 2.8539 1.6835 4.0571 32 1 1.6758 -1.7492 1.2490 33 1 1.6762 -0.2074 2.1391 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252564275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:35 Heat of formation + Delta-G solvation = -103.279215 kcal Electronic energy + Delta-G solvation = -13833.136398 eV Core-core repulsion = 11663.589817 eV Total energy + Delta-G solvation = -2169.546581 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.19931 -36.53973 -34.29958 -33.89492 -30.90404 -27.34651 -27.01421 -26.91042 -22.06006 -21.26074 -20.56656 -18.32005 -17.08196 -16.35838 -15.73525 -15.55236 -15.21892 -14.82879 -13.84595 -13.57621 -13.37154 -13.19235 -13.11837 -12.76009 -12.69739 -12.48790 -12.32457 -12.29497 -12.09053 -11.44085 -11.33184 -11.15764 -11.00451 -10.65164 -10.41695 -9.88460 -8.12700 -6.24852 1.39509 1.41757 1.49628 2.41531 3.10430 3.88468 4.02022 4.15001 4.40651 4.44197 4.69093 4.77134 4.80396 4.89078 4.90507 5.01458 5.03587 5.13084 5.15699 5.16937 5.25680 5.33756 5.37310 5.61060 5.65001 5.73661 5.77677 5.89659 6.11213 6.32926 6.79216 7.42371 7.58977 8.90719 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.030729 B = 0.014915 C = 0.014221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.975845 B = 1876.875827 C = 1968.486474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 H 0.052 0.948 4 C -0.095 4.095 5 C -0.082 4.082 6 H 0.058 0.942 7 C -0.137 4.137 8 C -0.085 4.085 9 C 0.228 3.772 10 O -0.613 6.613 11 C -0.535 4.535 12 H 0.052 0.948 13 C 0.028 3.972 14 N -0.916 5.916 15 Si 0.947 3.053 16 H -0.273 1.273 17 H -0.274 1.274 18 H -0.285 1.285 19 C -0.116 4.116 20 H 0.056 0.944 21 H 0.038 0.962 22 H 0.066 0.934 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.375 0.625 31 H 0.266 0.734 32 H 0.023 0.977 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.234 -1.403 -8.254 8.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.132 4.132 5 C -0.100 4.100 6 H 0.077 0.923 7 C -0.195 4.195 8 C -0.123 4.123 9 C 0.189 3.811 10 O -0.423 6.423 11 C -0.573 4.573 12 H 0.070 0.930 13 C -0.171 4.171 14 N -0.558 5.558 15 Si 0.773 3.227 16 H -0.198 1.198 17 H -0.199 1.199 18 H -0.211 1.211 19 C -0.154 4.154 20 H 0.075 0.925 21 H 0.057 0.943 22 H 0.085 0.915 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.225 0.775 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.031 -1.740 -8.544 9.231 hybrid contribution 0.116 1.362 1.054 1.726 sum -2.915 -0.378 -7.490 8.046 Atomic orbital electron populations 1.21766 0.94997 1.01476 1.01143 1.20934 0.94989 0.99316 0.94635 0.92996 1.21545 0.94493 1.00079 0.97112 1.21001 0.95990 0.99370 0.93670 0.92317 1.21784 1.00660 1.00406 0.96600 1.21372 0.98720 0.97627 0.94596 1.19034 0.90100 0.89474 0.82504 1.86075 1.78970 1.58789 1.18481 1.21874 1.31243 0.97273 1.06903 0.93005 1.25594 0.94519 1.02091 0.94866 1.69632 1.41448 1.36621 1.08108 0.85745 0.78690 0.81092 0.77161 1.19844 1.19932 1.21086 1.21937 0.98009 0.96778 0.98659 0.92529 0.94322 0.91480 0.90836 0.92228 0.92338 0.91241 0.93089 0.94502 0.93834 0.77480 0.92455 0.95825 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.19 71.98 0.66 -3.84 16 2 C -0.08 -3.19 2.50 -10.79 -0.03 -3.22 16 3 H 0.05 2.34 7.22 -2.39 -0.02 2.32 16 4 C -0.09 -3.21 4.48 30.59 0.14 -3.07 16 5 C -0.08 -2.98 2.49 -10.79 -0.03 -3.01 16 6 H 0.06 2.37 6.62 -2.38 -0.02 2.35 16 7 C -0.14 -3.86 9.20 71.98 0.66 -3.20 16 8 C -0.09 -3.75 4.34 30.60 0.13 -3.62 16 9 C 0.23 11.60 0.84 -11.54 -0.01 11.59 16 10 O -0.61 -34.22 12.96 -148.98 -1.93 -36.15 16 11 C -0.53 -28.82 6.29 25.60 0.16 -28.66 16 12 H 0.05 2.80 6.72 -2.91 -0.02 2.78 16 13 C 0.03 1.51 5.19 84.65 0.44 1.94 16 14 N -0.92 -50.16 9.75 21.44 0.21 -49.96 16 15 Si 0.95 42.88 29.54 68.60 2.03 44.90 16 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 19 C -0.12 -5.45 4.14 30.60 0.13 -5.33 16 20 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 21 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 25 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 26 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.04 1.66 8.14 -2.38 -0.02 1.65 16 29 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.37 21.36 6.93 -74.05 -0.51 20.85 16 31 H 0.27 13.94 8.31 -92.70 -0.77 13.17 16 32 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.05 2.88 6.32 -2.39 -0.02 2.86 16 Total: -1.00 -57.55 253.92 3.12 -54.43 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.56 Total: 27.18 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.26 Total: -40.40 kcal Atomic # 7 Polarization: -50.16 SS G_CDS: 0.21 Total: -49.96 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.93 Total: -36.15 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -57.55 3.12 -54.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252564275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.847 kcal (2) G-P(sol) polarization free energy of solvation -57.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds