Wall clock time and date at job start Mon Mar 30 2020 01:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47334 * 2 1 4 4 C 1.52995 * 109.47374 * 120.00653 * 2 1 3 5 5 C 1.53005 * 109.47296 * 73.13297 * 4 2 1 6 6 C 1.52998 * 112.99700 * 173.73476 * 5 4 2 7 7 C 1.50698 * 109.46839 * 180.02562 * 6 5 4 8 8 H 1.08007 * 120.00284 * 359.97438 * 7 6 5 9 9 C 1.37880 * 120.00208 * 179.72048 * 7 6 5 10 10 N 1.31512 * 119.99906 * 0.27607 * 9 7 6 11 11 Si 1.86794 * 120.00304 * 180.26911 * 9 7 6 12 12 H 1.48499 * 109.47229 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47368 * 119.99896 * 11 9 7 14 14 H 1.48505 * 109.47652 * 240.00208 * 11 9 7 15 15 C 1.54032 * 113.81274 * 305.55389 * 5 4 2 16 16 O 1.44446 * 85.42864 * 91.81169 * 15 5 4 17 17 C 1.44178 * 93.37448 * 24.08544 * 16 15 5 18 18 H 1.08995 * 109.47326 * 42.96679 * 1 2 3 19 19 H 1.09001 * 109.47344 * 162.97221 * 1 2 3 20 20 H 1.09008 * 109.46878 * 282.96970 * 1 2 3 21 21 H 1.09010 * 109.46599 * 240.00682 * 2 1 3 22 22 H 1.09001 * 109.47250 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.47236 * 300.00761 * 3 2 1 24 24 H 1.09005 * 109.46735 * 60.00270 * 3 2 1 25 25 H 1.09002 * 109.47186 * 313.13201 * 4 2 1 26 26 H 1.09000 * 109.47371 * 193.13047 * 4 2 1 27 27 H 1.08997 * 109.47786 * 59.99521 * 6 5 4 28 28 H 1.09004 * 109.46587 * 299.98934 * 6 5 4 29 29 H 0.97001 * 120.00564 * 179.97438 * 10 9 7 30 30 H 1.08998 * 113.86406 * 205.91718 * 15 5 4 31 31 H 1.09007 * 113.86777 * 337.61963 * 15 5 4 32 32 H 1.09008 * 113.86336 * 221.76777 * 17 16 15 33 33 H 1.08997 * 113.86682 * 90.06423 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.8155 -2.2271 1.0960 6 6 2.4341 -3.0424 2.2333 7 6 2.1674 -4.5077 2.0036 8 1 1.6118 -4.8256 1.1337 9 6 2.6371 -5.4429 2.9012 10 7 3.3132 -5.0559 3.9607 11 14 2.3129 -7.2598 2.6126 12 1 1.5365 -7.4309 1.3584 13 1 3.6059 -7.9809 2.4961 14 1 1.5392 -7.8120 3.7535 15 6 0.3575 -2.6093 0.7783 16 8 0.7585 -2.5233 -0.6068 17 6 2.1479 -2.7660 -0.3081 18 1 -0.3634 0.7519 -0.7004 19 1 -0.3634 -0.9826 -0.3009 20 1 -0.3633 0.2307 1.0015 21 1 1.8933 -0.5138 -0.8901 22 1 3.1301 1.4425 -0.0005 23 1 1.6766 1.9564 -0.8899 24 1 1.6767 1.9563 0.8901 25 1 1.4988 -0.3604 2.1236 26 1 3.1047 -0.5237 1.3736 27 1 1.9925 -2.7366 3.1817 28 1 3.5100 -2.8693 2.2608 29 1 3.6434 -5.7137 4.5925 30 1 0.0860 -3.6156 1.0971 31 1 -0.3710 -1.8549 1.0756 32 1 2.8366 -2.1355 -0.8708 33 1 2.4244 -3.8202 -0.3218 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258554584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:04 Heat of formation + Delta-G solvation = -24.925449 kcal Electronic energy + Delta-G solvation = -13447.380057 eV Core-core repulsion = 11281.231151 eV Total energy + Delta-G solvation = -2166.148906 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.40501 -35.13989 -33.31993 -31.01172 -27.37102 -27.10921 -25.36198 -24.70608 -22.85192 -19.70934 -17.95781 -16.47393 -15.67897 -15.15572 -14.96084 -14.19706 -13.88564 -13.23572 -12.71065 -12.24737 -12.21666 -11.99944 -11.84983 -11.42310 -11.20875 -10.87925 -10.73716 -10.42993 -10.28680 -10.17347 -9.93055 -9.38736 -9.33758 -8.89389 -8.39349 -8.38345 -6.04136 -4.06177 3.28544 3.36897 3.40697 4.42267 4.58303 5.11636 5.27410 5.31897 5.35805 5.44058 5.80224 5.90295 6.00792 6.07152 6.08404 6.17811 6.25085 6.29136 6.36895 6.49752 6.57524 6.72252 6.81872 6.85162 6.98701 7.08586 7.13515 7.64178 7.71192 7.94520 8.36725 8.99713 9.58068 11.07054 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.059503 B = 0.009613 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.448752 B = 2911.991367 C = 3150.904967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.096 4.096 3 C -0.146 4.146 4 C -0.089 4.089 5 C -0.118 4.118 6 C 0.031 3.969 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.058 3.942 10 N -0.893 5.893 11 Si 0.888 3.112 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.035 3.965 16 O -0.394 6.394 17 C 0.044 3.956 18 H 0.038 0.962 19 H 0.087 0.913 20 H 0.044 0.956 21 H 0.076 0.924 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.260 0.740 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 7.899 -5.945 10.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.127 4.127 5 C -0.118 4.118 6 C -0.006 4.006 7 C -0.558 4.558 8 H 0.079 0.921 9 C -0.143 4.143 10 N -0.532 5.532 11 Si 0.716 3.284 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.210 1.210 15 C -0.041 4.041 16 O -0.314 6.314 17 C -0.032 4.032 18 H 0.057 0.943 19 H 0.105 0.895 20 H 0.063 0.937 21 H 0.094 0.906 22 H 0.068 0.932 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.220 7.886 -6.030 10.437 hybrid contribution 0.066 -1.052 0.211 1.075 sum -3.154 6.834 -5.819 9.514 Atomic orbital electron populations 1.22372 0.95777 1.03175 1.00256 1.21158 0.96089 0.94811 0.99378 1.21892 1.00537 0.97020 1.00904 1.21417 1.00673 0.93651 0.96928 1.23543 0.95615 0.94792 0.97867 1.19050 0.95917 0.93611 0.92033 1.21322 1.34766 0.91442 1.08283 0.92089 1.25015 0.95175 0.98922 0.95208 1.69974 1.37082 1.33866 1.12297 0.86591 0.78003 0.85558 0.78221 1.19677 1.21046 1.21035 1.24376 0.97134 1.01741 0.80836 1.89480 1.22592 1.92194 1.27115 1.24096 0.83637 1.01137 0.94341 0.94269 0.89498 0.93691 0.90611 0.93158 0.93402 0.93211 0.92108 0.92070 0.96219 0.96222 0.93053 0.89246 0.90148 0.91281 0.89096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 7.60 37.16 0.28 -2.06 16 2 C -0.10 -1.46 2.38 -90.62 -0.22 -1.67 16 3 C -0.15 -1.88 9.08 37.16 0.34 -1.54 16 4 C -0.09 -1.54 4.57 -26.73 -0.12 -1.66 16 5 C -0.12 -2.37 1.38 -153.43 -0.21 -2.58 16 6 C 0.03 0.77 4.76 -27.88 -0.13 0.63 16 7 C -0.52 -13.95 7.30 -34.44 -0.25 -14.20 16 8 H 0.06 1.60 5.45 -52.48 -0.29 1.31 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 11 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 C 0.04 0.68 6.94 37.64 0.26 0.94 16 16 O -0.39 -7.67 9.44 -35.23 -0.33 -8.00 16 17 C 0.04 0.86 7.33 37.64 0.28 1.14 16 18 H 0.04 0.52 8.02 -51.93 -0.42 0.10 16 19 H 0.09 1.40 3.99 -51.93 -0.21 1.20 16 20 H 0.04 0.63 7.63 -51.92 -0.40 0.24 16 21 H 0.08 1.23 5.58 -51.92 -0.29 0.94 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 26 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 30 H 0.09 1.89 6.38 -51.93 -0.33 1.56 16 31 H 0.08 1.39 5.52 -51.93 -0.29 1.10 16 32 H 0.07 1.21 6.97 -51.92 -0.36 0.85 16 33 H 0.09 1.92 6.37 -51.93 -0.33 1.59 16 LS Contribution 251.26 15.07 3.79 3.79 Total: -1.00 -28.28 251.26 -5.69 -33.96 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -4.98 Total: -1.02 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 0.13 Total: -19.48 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.74 Total: -25.50 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: -0.33 Total: -8.00 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -28.28 -5.69 -33.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258554584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.038 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds