Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46957 * 2 1 4 4 C 1.52991 * 109.47228 * 239.99929 * 2 1 3 5 5 C 1.53006 * 109.47264 * 119.99771 * 2 1 3 6 6 C 1.52995 * 113.00028 * 297.84412 * 5 2 1 7 7 C 1.50700 * 109.47374 * 179.97438 * 6 5 2 8 8 H 1.08003 * 119.99600 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00076 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00357 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99796 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46962 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47022 * 119.99767 * 11 9 7 14 14 H 1.48493 * 109.47368 * 239.99948 * 11 9 7 15 15 C 1.54033 * 113.81775 * 165.85548 * 5 2 1 16 16 O 1.44179 * 85.51571 * 223.20183 * 15 5 2 17 17 C 1.44173 * 93.34475 * 24.19065 * 16 15 5 18 18 H 1.09003 * 109.46719 * 299.99786 * 1 2 3 19 19 H 1.08992 * 109.47152 * 60.00175 * 1 2 3 20 20 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47142 * 180.02562 * 3 2 1 22 22 H 1.09002 * 109.47572 * 299.99982 * 3 2 1 23 23 H 1.09000 * 109.47484 * 60.00072 * 3 2 1 24 24 H 1.09002 * 109.47555 * 300.00174 * 4 2 1 25 25 H 1.09002 * 109.47133 * 59.99892 * 4 2 1 26 26 H 1.08998 * 109.47543 * 180.02562 * 4 2 1 27 27 H 1.09004 * 109.47239 * 299.99584 * 6 5 2 28 28 H 1.09006 * 109.47195 * 59.99527 * 6 5 2 29 29 H 0.97001 * 120.00523 * 180.02562 * 10 9 7 30 30 H 1.09004 * 113.86262 * 337.34102 * 15 5 2 31 31 H 1.08991 * 113.86474 * 109.05261 * 15 5 2 32 32 H 1.09000 * 113.86639 * 221.66182 * 17 16 15 33 33 H 1.08997 * 113.86604 * 89.95690 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0401 -0.7212 1.2493 6 6 1.6192 -0.0342 2.5499 7 6 2.1609 -0.8073 3.7246 8 1 2.7465 -1.6998 3.5599 9 6 1.9081 -0.3759 5.0095 10 7 1.1947 0.7104 5.2101 11 14 2.5790 -1.3348 6.4656 12 1 3.3441 -2.5091 5.9748 13 1 3.4746 -0.4598 7.2641 14 1 1.4525 -1.7972 7.3153 15 6 3.5357 -1.0849 1.1905 16 8 3.1323 -2.3554 1.7400 17 6 1.7857 -2.2404 1.2378 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.1300 -0.7216 -1.2490 27 1 2.0152 0.9812 2.5691 28 1 0.5312 -0.0010 2.6078 29 1 1.0171 1.0141 6.1140 30 1 3.9345 -1.1491 0.1781 31 1 4.1600 -0.4932 1.8599 32 1 1.0222 -2.5651 1.9447 33 1 1.6501 -2.6573 0.2399 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259165982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = -27.114352 kcal Electronic energy + Delta-G solvation = -13717.854480 eV Core-core repulsion = 11551.610656 eV Total energy + Delta-G solvation = -2166.243824 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.36565 -35.73825 -32.81025 -29.58171 -27.45476 -27.19410 -25.72024 -25.24855 -22.58606 -20.41991 -17.01586 -16.57202 -15.20025 -15.09288 -14.98991 -14.10266 -13.47989 -13.42206 -12.78327 -12.40662 -12.07717 -11.80161 -11.63292 -11.40481 -11.14779 -10.90966 -10.60755 -10.58482 -10.42487 -10.18684 -9.71700 -9.43034 -9.42210 -8.88830 -8.24797 -8.13908 -5.90340 -3.88668 3.37857 3.45713 3.53783 4.55945 4.66835 5.04631 5.27230 5.39524 5.43678 5.53308 5.78239 5.94318 5.95788 5.98292 6.09112 6.20781 6.24694 6.33112 6.40200 6.48186 6.59111 6.66500 6.81042 6.82528 6.95828 7.10680 7.21484 7.75300 7.77183 8.13926 8.56386 9.25580 9.75994 11.21702 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045236 B = 0.012192 C = 0.010789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.825513 B = 2296.014418 C = 2594.587769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C -0.137 4.137 4 C -0.147 4.147 5 C -0.097 4.097 6 C 0.045 3.955 7 C -0.519 4.519 8 H 0.084 0.916 9 C 0.053 3.947 10 N -0.903 5.903 11 Si 0.887 3.113 12 H -0.271 1.271 13 H -0.287 1.287 14 H -0.287 1.287 15 C 0.039 3.961 16 O -0.367 6.367 17 C 0.040 3.960 18 H 0.064 0.936 19 H 0.043 0.957 20 H 0.049 0.951 21 H 0.049 0.951 22 H 0.043 0.957 23 H 0.065 0.935 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.024 0.976 28 H 0.023 0.977 29 H 0.256 0.744 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.518 -1.200 -10.745 10.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 C -0.194 4.194 4 C -0.203 4.203 5 C -0.097 4.097 6 C 0.008 3.992 7 C -0.557 4.557 8 H 0.102 0.898 9 C -0.146 4.146 10 N -0.543 5.543 11 Si 0.715 3.285 12 H -0.196 1.196 13 H -0.214 1.214 14 H -0.214 1.214 15 C -0.038 4.038 16 O -0.285 6.285 17 C -0.037 4.037 18 H 0.083 0.917 19 H 0.063 0.937 20 H 0.068 0.932 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.592 -1.301 -10.452 10.549 hybrid contribution 0.206 -0.284 0.831 0.902 sum 0.798 -1.585 -9.620 9.783 Atomic orbital electron populations 1.21815 0.94851 1.01333 1.01415 1.20549 0.95618 0.95607 0.94678 1.21823 1.00573 0.95613 1.01414 1.22077 1.00914 1.00203 0.97149 1.23728 0.94145 0.94627 0.97180 1.18952 0.96745 0.95331 0.88138 1.21858 1.32293 1.11325 0.90233 0.89777 1.25023 0.95492 0.95081 0.99025 1.69986 1.40075 1.23411 1.20872 0.86605 0.78716 0.80312 0.82847 1.19574 1.21355 1.21350 1.24023 0.97534 0.85318 0.96898 1.89596 1.25893 1.39795 1.73242 1.23986 0.86581 0.95751 0.97334 0.91716 0.93747 0.93172 0.93164 0.93808 0.91623 0.92714 0.93332 0.92609 0.95824 0.95892 0.93411 0.92036 0.89574 0.89549 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.12 37.16 0.30 -1.84 16 2 C -0.06 -1.05 0.48 -154.51 -0.07 -1.12 16 3 C -0.14 -2.17 8.05 37.16 0.30 -1.87 16 4 C -0.15 -2.01 7.69 37.15 0.29 -1.72 16 5 C -0.10 -1.91 0.52 -153.43 -0.08 -1.99 16 6 C 0.04 1.12 3.96 -27.89 -0.11 1.01 16 7 C -0.52 -14.51 7.83 -34.44 -0.27 -14.78 16 8 H 0.08 2.39 5.18 -52.48 -0.27 2.12 16 9 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -27.15 13.29 55.43 0.74 -26.42 16 11 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 12 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 15 C 0.04 0.76 7.36 37.61 0.28 1.04 16 16 O -0.37 -8.13 10.08 -35.23 -0.36 -8.48 16 17 C 0.04 0.79 7.16 37.61 0.27 1.06 16 18 H 0.06 1.14 6.78 -51.93 -0.35 0.78 16 19 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 20 H 0.05 0.75 7.78 -51.93 -0.40 0.35 16 21 H 0.05 0.77 7.94 -51.93 -0.41 0.35 16 22 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 1.16 6.69 -51.93 -0.35 0.82 16 24 H 0.05 0.73 6.12 -51.93 -0.32 0.41 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.75 6.04 -51.93 -0.31 0.43 16 27 H 0.02 0.63 6.75 -51.93 -0.35 0.28 16 28 H 0.02 0.61 6.84 -51.93 -0.36 0.25 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.06 1.02 5.73 -51.93 -0.30 0.72 16 31 H 0.09 1.79 7.94 -51.93 -0.41 1.38 16 32 H 0.09 1.80 7.94 -51.93 -0.41 1.39 16 33 H 0.06 1.00 5.93 -51.93 -0.31 0.69 16 LS Contribution 251.25 15.07 3.79 3.79 Total: -1.00 -30.03 251.25 -5.01 -35.04 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -4.96 Total: -2.49 kcal Atomic # 6 Polarization: -19.58 SS G_CDS: 0.80 Total: -18.78 kcal Atomic # 7 Polarization: -27.15 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.36 Total: -8.48 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.03 -5.01 -35.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259165982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.925 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds