Wall clock time and date at job start Mon Mar 30 2020 01:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46957 * 2 1 4 4 C 1.52991 * 109.47228 * 239.99929 * 2 1 3 5 5 C 1.53006 * 109.47264 * 119.99771 * 2 1 3 6 6 C 1.52995 * 113.00028 * 297.84412 * 5 2 1 7 7 C 1.50700 * 109.47374 * 179.97438 * 6 5 2 8 8 H 1.08003 * 119.99600 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00076 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00357 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99796 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.46962 * 0.02562 * 11 9 7 13 13 H 1.48499 * 109.47022 * 119.99767 * 11 9 7 14 14 H 1.48493 * 109.47368 * 239.99948 * 11 9 7 15 15 C 1.54033 * 113.81775 * 165.85548 * 5 2 1 16 16 O 1.44179 * 85.51571 * 223.20183 * 15 5 2 17 17 C 1.44173 * 93.34475 * 24.19065 * 16 15 5 18 18 H 1.09003 * 109.46719 * 299.99786 * 1 2 3 19 19 H 1.08992 * 109.47152 * 60.00175 * 1 2 3 20 20 H 1.08997 * 109.47189 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47142 * 180.02562 * 3 2 1 22 22 H 1.09002 * 109.47572 * 299.99982 * 3 2 1 23 23 H 1.09000 * 109.47484 * 60.00072 * 3 2 1 24 24 H 1.09002 * 109.47555 * 300.00174 * 4 2 1 25 25 H 1.09002 * 109.47133 * 59.99892 * 4 2 1 26 26 H 1.08998 * 109.47543 * 180.02562 * 4 2 1 27 27 H 1.09004 * 109.47239 * 299.99584 * 6 5 2 28 28 H 1.09006 * 109.47195 * 59.99527 * 6 5 2 29 29 H 0.97001 * 120.00523 * 180.02562 * 10 9 7 30 30 H 1.09004 * 113.86262 * 337.34102 * 15 5 2 31 31 H 1.08991 * 113.86474 * 109.05261 * 15 5 2 32 32 H 1.09000 * 113.86639 * 221.66182 * 17 16 15 33 33 H 1.08997 * 113.86604 * 89.95690 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 2.0401 -0.7212 1.2493 6 6 1.6192 -0.0342 2.5499 7 6 2.1609 -0.8073 3.7246 8 1 2.7465 -1.6998 3.5599 9 6 1.9081 -0.3759 5.0095 10 7 1.1947 0.7104 5.2101 11 14 2.5790 -1.3348 6.4656 12 1 3.3441 -2.5091 5.9748 13 1 3.4746 -0.4598 7.2641 14 1 1.4525 -1.7972 7.3153 15 6 3.5357 -1.0849 1.1905 16 8 3.1323 -2.3554 1.7400 17 6 1.7857 -2.2404 1.2378 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0276 0.0005 21 1 3.1300 1.4425 -0.0005 22 1 1.6767 1.9564 -0.8900 23 1 1.6767 1.9564 0.8900 24 1 1.6767 -1.7489 -1.2492 25 1 1.6767 -0.2074 -2.1392 26 1 3.1300 -0.7216 -1.2490 27 1 2.0152 0.9812 2.5691 28 1 0.5312 -0.0010 2.6078 29 1 1.0171 1.0141 6.1140 30 1 3.9345 -1.1491 0.1781 31 1 4.1600 -0.4932 1.8599 32 1 1.0222 -2.5651 1.9447 33 1 1.6501 -2.6573 0.2399 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259165982.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:05 Heat of formation + Delta-G solvation = -45.965481 kcal Electronic energy + Delta-G solvation = -13718.671927 eV Core-core repulsion = 11551.610656 eV Total energy + Delta-G solvation = -2167.061271 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93919 -37.13127 -34.97029 -31.45281 -28.81122 -28.53268 -27.45226 -26.73471 -24.53026 -21.89946 -18.75883 -18.36503 -16.97968 -16.64331 -16.60027 -16.08583 -14.87466 -14.83109 -14.26352 -14.10903 -13.80555 -13.11451 -13.03881 -12.98032 -12.93573 -12.60897 -12.37475 -12.08130 -11.92069 -11.90487 -11.42198 -11.22143 -11.00712 -10.57184 -10.44963 -9.85968 -8.13122 -6.17420 1.36242 1.38157 1.51988 2.44674 3.07554 3.20667 3.56047 3.95837 4.10066 4.21175 4.33180 4.54545 4.61868 4.73323 4.86614 4.91475 4.96278 5.01589 5.08189 5.16969 5.25466 5.32022 5.37642 5.44568 5.45584 5.58709 5.66851 5.75549 5.76307 5.91958 6.41891 7.04062 7.50773 8.99207 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045236 B = 0.012192 C = 0.010789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.825513 B = 2296.014418 C = 2594.587769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.141 4.141 5 C -0.098 4.098 6 C 0.055 3.945 7 C -0.527 4.527 8 H 0.080 0.920 9 C -0.002 4.002 10 N -0.938 5.938 11 Si 0.950 3.050 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.281 1.281 15 C 0.044 3.956 16 O -0.398 6.398 17 C 0.045 3.955 18 H 0.032 0.968 19 H 0.071 0.929 20 H 0.055 0.945 21 H 0.053 0.947 22 H 0.071 0.929 23 H 0.032 0.968 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.062 0.938 27 H -0.002 1.002 28 H -0.003 1.003 29 H 0.258 0.742 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.060 -2.081 -12.643 12.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.062 4.062 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.098 4.098 6 C 0.018 3.982 7 C -0.565 4.565 8 H 0.098 0.902 9 C -0.198 4.198 10 N -0.580 5.580 11 Si 0.776 3.224 12 H -0.194 1.194 13 H -0.207 1.207 14 H -0.207 1.207 15 C -0.033 4.033 16 O -0.317 6.317 17 C -0.031 4.031 18 H 0.051 0.949 19 H 0.090 0.910 20 H 0.074 0.926 21 H 0.072 0.928 22 H 0.090 0.910 23 H 0.051 0.949 24 H 0.080 0.920 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.016 0.984 28 H 0.015 0.985 29 H 0.067 0.933 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.135 -2.186 -12.356 12.599 hybrid contribution 0.019 0.019 1.409 1.409 sum 1.154 -2.167 -10.947 11.219 Atomic orbital electron populations 1.21799 0.94605 1.01656 1.01203 1.20548 0.95861 0.95645 0.94182 1.21804 1.00825 0.95464 1.01179 1.22021 1.01278 1.00369 0.96075 1.23494 0.94904 0.95078 0.96341 1.18718 0.94730 0.94256 0.90499 1.22216 1.31662 1.11189 0.91477 0.90185 1.25834 0.95997 0.96063 1.01903 1.70104 1.41480 1.24931 1.21464 0.85621 0.78181 0.78962 0.79642 1.19371 1.20734 1.20728 1.24140 0.96816 0.83999 0.98299 1.89553 1.27056 1.40742 1.74312 1.24096 0.85106 0.95280 0.98641 0.94891 0.90968 0.92610 0.92759 0.90999 0.94866 0.92008 0.90898 0.91964 0.98377 0.98505 0.93337 0.87916 0.91761 0.91745 0.88079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 8.12 71.98 0.58 -3.44 16 2 C -0.06 -1.89 0.48 -52.18 -0.02 -1.91 16 3 C -0.14 -4.08 8.05 71.98 0.58 -3.50 16 4 C -0.14 -3.21 7.69 71.98 0.55 -2.65 16 5 C -0.10 -3.82 0.52 -51.48 -0.03 -3.84 16 6 C 0.05 2.82 3.96 29.85 0.12 2.94 16 7 C -0.53 -30.23 7.83 25.60 0.20 -30.03 16 8 H 0.08 4.61 5.18 -2.91 -0.02 4.60 16 9 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 10 N -0.94 -58.01 13.29 21.45 0.28 -57.73 16 11 Si 0.95 46.62 29.54 68.60 2.03 48.65 16 12 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 15 C 0.04 1.64 7.36 72.27 0.53 2.18 16 16 O -0.40 -17.17 10.08 -148.98 -1.50 -18.67 16 17 C 0.04 1.70 7.16 72.28 0.52 2.21 16 18 H 0.03 1.17 6.78 -2.39 -0.02 1.15 16 19 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.05 1.57 7.78 -2.39 -0.02 1.55 16 21 H 0.05 1.56 7.94 -2.39 -0.02 1.54 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.03 1.19 6.69 -2.39 -0.02 1.18 16 24 H 0.06 1.34 6.12 -2.39 -0.01 1.32 16 25 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.06 1.35 6.04 -2.39 -0.01 1.34 16 27 H 0.00 -0.11 6.75 -2.38 -0.02 -0.13 16 28 H 0.00 -0.19 6.84 -2.38 -0.02 -0.20 16 29 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.10 3.04 5.73 -2.39 -0.01 3.02 16 31 H 0.06 2.67 7.94 -2.39 -0.02 2.65 16 32 H 0.06 2.68 7.94 -2.39 -0.02 2.66 16 33 H 0.10 2.99 5.93 -2.39 -0.01 2.98 16 Total: -1.00 -65.87 251.25 5.39 -60.49 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: 1.08 Total: 4.95 kcal Atomic # 6 Polarization: -41.18 SS G_CDS: 3.50 Total: -37.69 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.28 Total: -57.73 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -1.50 Total: -18.67 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -65.87 5.39 -60.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259165982.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.523 kcal (2) G-P(sol) polarization free energy of solvation -65.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds