Wall clock time and date at job start Mon Mar 30 2020 01:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.48850 * 2 1 4 4 C 1.53095 * 109.47902 * 120.02599 * 2 1 3 5 5 C 1.53176 * 109.16286 * 62.37677 * 4 2 1 6 6 C 1.53181 * 109.03560 * 56.98068 * 5 4 2 7 7 H 1.08994 * 109.52035 * 62.92686 * 6 5 4 8 8 C 1.52999 * 109.51665 * 183.11384 * 6 5 4 9 9 C 1.50710 * 109.46805 * 184.99872 * 8 6 5 10 10 H 1.07999 * 119.99820 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00025 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99890 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47165 * 60.00214 * 13 11 9 15 15 H 1.48499 * 109.47147 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47218 * 299.99822 * 13 11 9 17 17 C 1.53095 * 109.15940 * 303.01673 * 6 5 4 18 18 O 1.42895 * 109.41568 * 57.61417 * 17 6 5 19 19 H 1.09004 * 109.47247 * 299.97343 * 1 2 3 20 20 H 1.09000 * 109.47133 * 59.97773 * 1 2 3 21 21 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47093 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46851 * 300.02704 * 3 2 1 24 24 H 1.08996 * 109.47644 * 60.02985 * 3 2 1 25 25 H 1.09001 * 109.52293 * 302.46429 * 4 2 1 26 26 H 1.09007 * 109.52035 * 182.28197 * 4 2 1 27 27 H 1.08996 * 109.54020 * 176.84590 * 5 4 2 28 28 H 1.08999 * 109.54211 * 297.02393 * 5 4 2 29 29 H 1.08997 * 109.47146 * 304.99414 * 8 6 5 30 30 H 1.09002 * 109.47527 * 64.99974 * 8 6 5 31 31 H 0.97002 * 119.99701 * 180.02562 * 12 11 9 32 32 H 1.09010 * 109.47455 * 177.59523 * 17 6 5 33 33 H 1.09000 * 109.48076 * 297.62503 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5757 -2.1813 1.2122 6 6 2.0765 -2.8322 -0.0808 7 1 3.1664 -2.8400 -0.0862 8 6 1.5532 -4.2674 -0.1665 9 6 2.1450 -4.9464 -1.3749 10 1 2.8258 -4.4080 -2.0176 11 6 1.8172 -6.2549 -1.6599 12 7 0.9877 -6.9104 -0.8776 13 14 2.5500 -7.0963 -3.1580 14 1 4.0302 -7.1146 -3.0408 15 1 2.0423 -8.4893 -3.2413 16 1 2.1596 -6.3536 -4.3833 17 6 1.5645 -2.0284 -1.2790 18 8 2.0066 -0.6743 -1.1663 19 1 -0.3634 0.5134 0.8902 20 1 -0.3633 0.5142 -0.8898 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1304 1.4420 -0.0005 23 1 1.6768 1.9564 -0.8898 24 1 1.6777 1.9562 0.8902 25 1 1.6421 -0.2356 2.1399 26 1 3.1298 -0.6873 1.2710 27 1 1.9825 -2.7156 2.0707 28 1 0.4868 -2.2179 1.2424 29 1 1.8390 -4.8127 0.7329 30 1 0.4668 -4.2535 -0.2533 31 1 0.7574 -7.8311 -1.0779 32 1 1.9531 -2.4623 -2.2004 33 1 0.4750 -2.0551 -1.2957 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259508558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:26 Heat of formation + Delta-G solvation = -77.941039 kcal Electronic energy + Delta-G solvation = -13275.295930 eV Core-core repulsion = 11106.848095 eV Total energy + Delta-G solvation = -2168.447835 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.49563 -34.49515 -33.26845 -32.20658 -28.90904 -27.37048 -25.78958 -23.96966 -22.20751 -20.28686 -18.47767 -16.30269 -15.73904 -15.29888 -14.63574 -14.36941 -13.69968 -13.23810 -12.94588 -12.23436 -12.15027 -11.99638 -11.85616 -11.53428 -11.36201 -11.22305 -10.84611 -10.79057 -10.47326 -10.34162 -10.01703 -9.72214 -9.15184 -8.94659 -8.67256 -8.32820 -5.99719 -4.02081 3.34206 3.38438 3.41337 4.27164 4.46575 5.03894 5.11461 5.25588 5.36011 5.49225 5.68165 5.74448 5.80672 5.86773 5.94564 5.98739 6.04300 6.19441 6.27789 6.31942 6.44936 6.55143 6.60786 6.91286 6.99846 7.06659 7.65677 7.78868 7.88747 7.99935 8.42132 9.04302 9.62146 11.11461 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062196 B = 0.008521 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.084819 B = 3285.152148 C = 3468.092369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.110 3.890 3 C -0.135 4.135 4 C -0.140 4.140 5 C -0.119 4.119 6 C -0.113 4.113 7 H 0.063 0.937 8 C 0.029 3.971 9 C -0.521 4.521 10 H 0.056 0.944 11 C 0.057 3.943 12 N -0.896 5.896 13 Si 0.891 3.109 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.276 1.276 17 C 0.072 3.928 18 O -0.385 6.385 19 H 0.059 0.941 20 H 0.058 0.942 21 H 0.068 0.932 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.018 0.982 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.099 0.901 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 12.527 2.823 12.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.070 3.930 3 C -0.193 4.193 4 C -0.178 4.178 5 C -0.157 4.157 6 C -0.132 4.132 7 H 0.082 0.918 8 C -0.008 4.008 9 C -0.559 4.559 10 H 0.074 0.926 11 C -0.144 4.144 12 N -0.535 5.535 13 Si 0.718 3.282 14 H -0.202 1.202 15 H -0.213 1.213 16 H -0.202 1.202 17 C -0.004 4.004 18 O -0.305 6.305 19 H 0.078 0.922 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.083 0.917 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.085 12.442 2.710 12.734 hybrid contribution 0.164 -0.825 -0.565 1.014 sum 0.079 11.616 2.144 11.813 Atomic orbital electron populations 1.22442 0.96337 1.03052 1.01781 1.21364 0.92802 0.92313 0.86518 1.21739 1.01665 0.94106 1.01755 1.22179 1.01284 0.97029 0.97268 1.21736 1.00633 0.94116 0.99174 1.21806 1.00404 0.98139 0.92802 0.91819 1.19076 0.96208 0.88357 0.97137 1.21239 1.27258 0.97147 1.10229 0.92556 1.25019 0.95177 0.97518 0.96666 1.69956 1.34637 1.10953 1.37970 0.86680 0.79546 0.78533 0.83404 1.20239 1.21324 1.20202 1.22704 0.98201 0.79564 0.99899 1.87897 1.74040 1.26215 1.42310 0.92198 0.92325 0.91316 0.92129 0.92233 0.91731 0.92039 0.91622 0.92209 0.92220 0.96380 0.96595 0.92965 0.88270 0.93644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.50 7.93 37.16 0.29 -2.20 16 2 C 0.11 1.67 1.11 -90.57 -0.10 1.57 16 3 C -0.14 -1.67 8.85 37.16 0.33 -1.34 16 4 C -0.14 -2.11 4.92 -26.59 -0.13 -2.24 16 5 C -0.12 -2.11 5.00 -26.55 -0.13 -2.25 16 6 C -0.11 -2.38 2.34 -90.48 -0.21 -2.59 16 7 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 8 C 0.03 0.75 4.45 -27.88 -0.12 0.63 16 9 C -0.52 -14.60 8.45 -34.44 -0.29 -14.89 16 10 H 0.06 1.54 7.08 -52.49 -0.37 1.17 16 11 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 12 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 13 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 C 0.07 1.45 5.57 37.21 0.21 1.65 16 18 O -0.38 -7.17 10.24 -35.23 -0.36 -7.53 16 19 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 20 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 21 H 0.07 1.06 4.98 -51.93 -0.26 0.80 16 22 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 28 H 0.06 1.04 6.62 -51.93 -0.34 0.70 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.10 2.11 7.05 -51.92 -0.37 1.75 16 33 H 0.05 0.90 6.34 -51.93 -0.33 0.57 16 LS Contribution 258.40 15.07 3.89 3.89 Total: -1.00 -29.63 258.40 -6.46 -36.09 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -5.45 Total: -2.87 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -0.26 Total: -20.11 kcal Atomic # 7 Polarization: -26.92 SS G_CDS: 0.74 Total: -26.18 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.36 Total: -7.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -29.63 -6.46 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.852 kcal (2) G-P(sol) polarization free energy of solvation -29.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds