Wall clock time and date at job start Mon Mar 30 2020 01:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.48850 * 2 1 4 4 C 1.53095 * 109.47902 * 120.02599 * 2 1 3 5 5 C 1.53176 * 109.16286 * 62.37677 * 4 2 1 6 6 C 1.53181 * 109.03560 * 56.98068 * 5 4 2 7 7 H 1.08994 * 109.52035 * 62.92686 * 6 5 4 8 8 C 1.52999 * 109.51665 * 183.11384 * 6 5 4 9 9 C 1.50710 * 109.46805 * 184.99872 * 8 6 5 10 10 H 1.07999 * 119.99820 * 359.97438 * 9 8 6 11 11 C 1.37875 * 120.00025 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99890 * 0.02562 * 11 9 8 13 13 Si 1.86792 * 119.99896 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47165 * 60.00214 * 13 11 9 15 15 H 1.48499 * 109.47147 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47218 * 299.99822 * 13 11 9 17 17 C 1.53095 * 109.15940 * 303.01673 * 6 5 4 18 18 O 1.42895 * 109.41568 * 57.61417 * 17 6 5 19 19 H 1.09004 * 109.47247 * 299.97343 * 1 2 3 20 20 H 1.09000 * 109.47133 * 59.97773 * 1 2 3 21 21 H 1.09001 * 109.46773 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47093 * 180.02562 * 3 2 1 23 23 H 1.09003 * 109.46851 * 300.02704 * 3 2 1 24 24 H 1.08996 * 109.47644 * 60.02985 * 3 2 1 25 25 H 1.09001 * 109.52293 * 302.46429 * 4 2 1 26 26 H 1.09007 * 109.52035 * 182.28197 * 4 2 1 27 27 H 1.08996 * 109.54020 * 176.84590 * 5 4 2 28 28 H 1.08999 * 109.54211 * 297.02393 * 5 4 2 29 29 H 1.08997 * 109.47146 * 304.99414 * 8 6 5 30 30 H 1.09002 * 109.47527 * 64.99974 * 8 6 5 31 31 H 0.97002 * 119.99701 * 180.02562 * 12 11 9 32 32 H 1.09010 * 109.47455 * 177.59523 * 17 6 5 33 33 H 1.09000 * 109.48076 * 297.62503 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7222 1.2496 5 6 1.5757 -2.1813 1.2122 6 6 2.0765 -2.8322 -0.0808 7 1 3.1664 -2.8400 -0.0862 8 6 1.5532 -4.2674 -0.1665 9 6 2.1450 -4.9464 -1.3749 10 1 2.8258 -4.4080 -2.0176 11 6 1.8172 -6.2549 -1.6599 12 7 0.9877 -6.9104 -0.8776 13 14 2.5500 -7.0963 -3.1580 14 1 4.0302 -7.1146 -3.0408 15 1 2.0423 -8.4893 -3.2413 16 1 2.1596 -6.3536 -4.3833 17 6 1.5645 -2.0284 -1.2790 18 8 2.0066 -0.6743 -1.1663 19 1 -0.3634 0.5134 0.8902 20 1 -0.3633 0.5142 -0.8898 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1304 1.4420 -0.0005 23 1 1.6768 1.9564 -0.8898 24 1 1.6777 1.9562 0.8902 25 1 1.6421 -0.2356 2.1399 26 1 3.1298 -0.6873 1.2710 27 1 1.9825 -2.7156 2.0707 28 1 0.4868 -2.2179 1.2424 29 1 1.8390 -4.8127 0.7329 30 1 0.4668 -4.2535 -0.2533 31 1 0.7574 -7.8311 -1.0779 32 1 1.9531 -2.4623 -2.2004 33 1 0.4750 -2.0551 -1.2957 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259508558.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:25 Heat of formation + Delta-G solvation = -95.648438 kcal Electronic energy + Delta-G solvation = -13276.063780 eV Core-core repulsion = 11106.848095 eV Total energy + Delta-G solvation = -2169.215685 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.89318 -36.29081 -34.61288 -34.17005 -30.52669 -28.53014 -27.48662 -25.68055 -23.82300 -21.86810 -19.96305 -18.46636 -17.04865 -16.80192 -16.43207 -15.92058 -15.04549 -14.85748 -14.48578 -13.95022 -13.53265 -13.29870 -13.18932 -13.04495 -12.86553 -12.67624 -12.60032 -12.50727 -11.99655 -11.85079 -11.69788 -11.52270 -10.87498 -10.79552 -10.58248 -10.12964 -8.20195 -6.30559 1.39322 1.41818 1.49719 2.40450 2.93224 3.13718 3.86171 3.93291 4.00590 4.08204 4.23394 4.43219 4.56078 4.65597 4.70542 4.84012 4.88140 4.94249 4.96089 5.07861 5.11065 5.16801 5.22508 5.32428 5.41748 5.46666 5.54945 5.70516 5.83878 6.24640 6.46586 6.84656 7.38423 8.91348 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.062196 B = 0.008521 C = 0.008072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.084819 B = 3285.152148 C = 3468.092369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 C -0.131 4.131 4 C -0.133 4.133 5 C -0.117 4.117 6 C -0.106 4.106 7 H 0.051 0.949 8 C 0.037 3.963 9 C -0.538 4.538 10 H 0.059 0.941 11 C 0.002 3.998 12 N -0.933 5.933 13 Si 0.960 3.040 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.267 1.267 17 C 0.084 3.916 18 O -0.396 6.396 19 H 0.087 0.913 20 H 0.062 0.938 21 H 0.047 0.953 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.061 0.939 29 H -0.009 1.009 30 H -0.006 1.006 31 H 0.263 0.737 32 H 0.080 0.920 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 14.090 2.772 14.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.171 4.171 5 C -0.154 4.154 6 C -0.125 4.125 7 H 0.070 0.930 8 C 0.000 4.000 9 C -0.576 4.576 10 H 0.077 0.923 11 C -0.196 4.196 12 N -0.573 5.573 13 Si 0.785 3.215 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.192 1.192 17 C 0.007 3.993 18 O -0.316 6.316 19 H 0.106 0.894 20 H 0.081 0.919 21 H 0.066 0.934 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.112 0.888 25 H 0.113 0.887 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.009 0.991 30 H 0.012 0.988 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.238 14.026 2.663 14.278 hybrid contribution 0.047 -1.278 -0.499 1.373 sum 0.285 12.747 2.163 12.933 Atomic orbital electron populations 1.22423 0.95332 1.02179 1.03423 1.21793 0.93820 0.93601 0.85152 1.21750 1.01630 0.91970 1.03416 1.22162 1.01318 0.94882 0.98710 1.21687 1.00684 0.96072 0.96984 1.21637 0.99458 0.95805 0.95562 0.92998 1.18933 0.94729 0.91095 0.95289 1.21631 1.27312 0.97717 1.10953 0.92263 1.25932 0.95531 0.98323 0.99835 1.70085 1.35969 1.11376 1.39886 0.85573 0.78935 0.77417 0.79599 1.19362 1.20770 1.19165 1.22373 0.97887 0.80620 0.98392 1.87883 1.74451 1.24970 1.44314 0.89406 0.91906 0.93399 0.92255 0.91888 0.88800 0.88748 0.91744 0.92229 0.92078 0.99055 0.98797 0.92783 0.90194 0.93701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.49 7.93 71.98 0.57 -3.92 16 2 C 0.10 2.66 1.11 -10.76 -0.01 2.65 16 3 C -0.13 -2.77 8.85 71.98 0.64 -2.13 16 4 C -0.13 -3.68 4.92 30.69 0.15 -3.53 16 5 C -0.12 -4.07 5.00 30.71 0.15 -3.91 16 6 C -0.11 -4.54 2.34 -10.70 -0.03 -4.56 16 7 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 8 C 0.04 1.96 4.45 29.85 0.13 2.09 16 9 C -0.54 -30.84 8.45 25.60 0.22 -30.63 16 10 H 0.06 3.28 7.08 -2.91 -0.02 3.26 16 11 C 0.00 0.09 5.46 84.65 0.46 0.55 16 12 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 13 Si 0.96 44.78 29.54 68.60 2.03 46.81 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 C 0.08 3.39 5.57 72.01 0.40 3.79 16 18 O -0.40 -14.36 10.24 -148.98 -1.52 -15.88 16 19 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 20 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.05 1.41 4.98 -2.39 -0.01 1.40 16 22 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.10 6.62 -2.39 -0.02 2.09 16 29 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 32 H 0.08 3.49 7.05 -2.38 -0.02 3.47 16 33 H 0.04 1.80 6.34 -2.39 -0.02 1.79 16 Total: -1.00 -64.01 258.40 4.53 -59.48 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: 1.06 Total: 6.06 kcal Atomic # 6 Polarization: -42.28 SS G_CDS: 2.69 Total: -39.59 kcal Atomic # 7 Polarization: -57.16 SS G_CDS: 0.28 Total: -56.88 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: -1.52 Total: -15.88 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.01 4.53 -59.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508558.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.170 kcal (2) G-P(sol) polarization free energy of solvation -64.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds