Wall clock time and date at job start Mon Mar 30 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49129 * 2 1 4 4 C 1.53091 * 109.47862 * 120.03017 * 2 1 3 5 5 C 1.53176 * 109.21206 * 177.62293 * 4 2 1 6 6 C 1.53174 * 109.04061 * 302.98570 * 5 4 2 7 7 H 1.09001 * 109.51989 * 297.07828 * 6 5 4 8 8 C 1.52996 * 109.52508 * 176.95256 * 6 5 4 9 9 C 1.50700 * 109.46870 * 175.00060 * 8 6 5 10 10 H 1.07997 * 120.00403 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99787 * 179.97438 * 9 8 6 12 12 N 1.31508 * 120.00141 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99989 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47079 * 90.00091 * 13 11 9 15 15 H 1.48501 * 109.47005 * 210.00031 * 13 11 9 16 16 H 1.48502 * 109.46899 * 330.00126 * 13 11 9 17 17 C 1.53097 * 109.16185 * 56.97999 * 6 5 4 18 18 O 1.42902 * 109.41493 * 302.39739 * 17 6 5 19 19 H 1.08995 * 109.47155 * 299.97273 * 1 2 3 20 20 H 1.09011 * 109.46982 * 59.97379 * 1 2 3 21 21 H 1.09002 * 109.47436 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46897 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.46893 * 300.03088 * 3 2 1 24 24 H 1.09004 * 109.47002 * 60.02467 * 3 2 1 25 25 H 1.09002 * 109.52401 * 57.68445 * 4 2 1 26 26 H 1.09004 * 109.52068 * 297.56090 * 4 2 1 27 27 H 1.08995 * 109.54674 * 62.85906 * 5 4 2 28 28 H 1.09007 * 109.53937 * 183.03159 * 5 4 2 29 29 H 1.08995 * 109.46815 * 294.99983 * 8 6 5 30 30 H 1.09000 * 109.46941 * 55.00251 * 8 6 5 31 31 H 0.96998 * 120.00318 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47580 * 62.37620 * 17 6 5 33 33 H 1.08996 * 109.48015 * 182.39657 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2137 6 6 4.0190 -1.4606 -0.0785 7 1 3.6627 -2.4907 -0.0840 8 6 5.5466 -1.4476 -0.1620 9 6 5.9904 -2.2323 -1.3696 10 1 5.2563 -2.6945 -2.0130 11 6 7.3336 -2.3603 -1.6532 12 7 7.7209 -3.0447 -2.7073 13 14 8.6034 -1.5603 -0.5409 14 1 8.9929 -2.5121 0.5303 15 1 9.8014 -1.1961 -1.3392 16 1 8.0251 -0.3366 0.0704 17 6 3.4333 -0.7103 -1.2777 18 8 2.0091 -0.6751 -1.1664 19 1 -0.3633 0.5134 0.8902 20 1 -0.3633 0.5143 -0.8898 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1305 1.4419 -0.0005 23 1 1.6769 1.9564 -0.8897 24 1 1.6777 1.9562 0.8902 25 1 1.6442 -1.7375 1.2709 26 1 1.7138 -0.1849 2.1399 27 1 3.9689 0.2435 1.2425 28 1 3.9383 -1.3310 2.0737 29 1 5.8970 -0.4191 -0.2483 30 1 5.9636 -1.8992 0.7381 31 1 8.6659 -3.1350 -2.9066 32 1 3.8219 0.3079 -1.2943 33 1 3.7137 -1.2215 -2.1986 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259508560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:27 Heat of formation + Delta-G solvation = -74.140792 kcal Electronic energy + Delta-G solvation = -13310.158954 eV Core-core repulsion = 11141.875910 eV Total energy + Delta-G solvation = -2168.283044 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.55751 -34.60874 -33.32132 -32.21742 -29.27559 -27.44843 -26.12209 -23.92845 -22.03540 -20.19736 -18.59058 -16.74363 -15.80470 -15.31499 -14.64700 -14.30503 -13.81433 -13.25021 -12.94496 -12.50891 -12.22515 -12.19071 -11.92591 -11.68129 -11.57033 -11.44038 -10.85340 -10.80042 -10.56775 -10.25162 -9.87961 -9.62536 -9.39655 -9.05546 -8.74855 -8.52158 -6.04068 -4.02060 3.30029 3.37688 3.40911 4.22148 4.44972 4.97948 5.05477 5.19006 5.29283 5.39635 5.59714 5.65798 5.73239 5.81939 5.87664 5.93644 5.96916 6.13615 6.19716 6.23052 6.36691 6.47033 6.49944 6.72161 6.85466 6.93677 7.23460 7.41588 7.78936 7.82975 8.54003 9.01017 9.58463 11.09165 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060665 B = 0.009044 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.442561 B = 3095.264836 C = 3266.723077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.109 3.891 3 C -0.179 4.179 4 C -0.140 4.140 5 C -0.122 4.122 6 C -0.105 4.105 7 H 0.070 0.930 8 C -0.007 4.007 9 C -0.520 4.520 10 H 0.074 0.926 11 C 0.067 3.933 12 N -0.903 5.903 13 Si 0.878 3.122 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.072 3.928 18 O -0.382 6.382 19 H 0.064 0.936 20 H 0.059 0.941 21 H 0.060 0.940 22 H 0.067 0.933 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.263 0.737 32 H 0.044 0.956 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.769 7.469 7.449 15.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.069 3.931 3 C -0.236 4.236 4 C -0.177 4.177 5 C -0.159 4.159 6 C -0.124 4.124 7 H 0.088 0.912 8 C -0.045 4.045 9 C -0.558 4.558 10 H 0.092 0.908 11 C -0.134 4.134 12 N -0.542 5.542 13 Si 0.706 3.294 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.191 1.191 17 C -0.004 4.004 18 O -0.302 6.302 19 H 0.083 0.917 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -10.732 7.335 7.211 14.865 hybrid contribution 1.106 0.424 0.736 1.394 sum -9.626 7.759 7.946 14.697 Atomic orbital electron populations 1.21736 0.93291 1.02449 1.01798 1.21399 0.94039 0.91159 0.86502 1.22441 1.02606 0.96680 1.01870 1.22167 0.97145 1.01044 0.97373 1.21770 0.94226 1.00861 0.99062 1.21625 0.98348 0.99307 0.93073 0.91197 1.19566 0.90573 0.96921 0.97425 1.21166 0.92885 1.32413 1.09322 0.90758 1.25033 0.98573 0.94827 0.95016 1.69912 1.16001 1.41293 1.26948 0.86805 0.81191 0.80490 0.80946 1.20353 1.21408 1.19082 1.22700 0.78439 0.99283 0.99962 1.87947 1.22820 1.77155 1.42269 0.91724 0.92158 0.92051 0.91455 0.92219 0.92188 0.91455 0.91964 0.92261 0.92160 0.96665 0.96829 0.92758 0.93727 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.85 37.16 0.33 -1.30 16 2 C 0.11 1.60 1.11 -90.57 -0.10 1.50 16 3 C -0.18 -2.39 7.94 37.16 0.29 -2.09 16 4 C -0.14 -2.01 4.92 -26.59 -0.13 -2.14 16 5 C -0.12 -2.03 5.00 -26.55 -0.13 -2.16 16 6 C -0.10 -2.12 2.33 -90.48 -0.21 -2.34 16 7 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 8 C -0.01 -0.18 3.52 -27.88 -0.10 -0.28 16 9 C -0.52 -14.69 9.00 -34.44 -0.31 -15.00 16 10 H 0.07 2.25 7.32 -52.49 -0.38 1.87 16 11 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 12 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 13 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.27 -6.33 6.54 56.52 0.37 -5.97 16 17 C 0.07 1.42 5.58 37.21 0.21 1.63 16 18 O -0.38 -7.03 10.24 -35.23 -0.36 -7.39 16 19 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 20 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.07 0.98 4.98 -51.93 -0.26 0.72 16 23 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.95 6.62 -51.93 -0.34 0.61 16 28 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 29 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 30 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 31 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 32 H 0.04 0.85 6.34 -51.93 -0.33 0.52 16 33 H 0.10 2.27 7.05 -51.93 -0.37 1.91 16 LS Contribution 254.82 15.07 3.84 3.84 Total: -1.00 -30.09 254.82 -6.09 -36.17 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -5.42 Total: -2.31 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -0.25 Total: -20.33 kcal Atomic # 7 Polarization: -27.86 SS G_CDS: 0.77 Total: -27.08 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.36 Total: -7.39 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.09 -6.09 -36.17 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.967 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds