Wall clock time and date at job start Mon Mar 30 2020 01:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.49129 * 2 1 4 4 C 1.53091 * 109.47862 * 120.03017 * 2 1 3 5 5 C 1.53176 * 109.21206 * 177.62293 * 4 2 1 6 6 C 1.53174 * 109.04061 * 302.98570 * 5 4 2 7 7 H 1.09001 * 109.51989 * 297.07828 * 6 5 4 8 8 C 1.52996 * 109.52508 * 176.95256 * 6 5 4 9 9 C 1.50700 * 109.46870 * 175.00060 * 8 6 5 10 10 H 1.07997 * 120.00403 * 359.97438 * 9 8 6 11 11 C 1.37882 * 119.99787 * 179.97438 * 9 8 6 12 12 N 1.31508 * 120.00141 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99989 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47079 * 90.00091 * 13 11 9 15 15 H 1.48501 * 109.47005 * 210.00031 * 13 11 9 16 16 H 1.48502 * 109.46899 * 330.00126 * 13 11 9 17 17 C 1.53097 * 109.16185 * 56.97999 * 6 5 4 18 18 O 1.42902 * 109.41493 * 302.39739 * 17 6 5 19 19 H 1.08995 * 109.47155 * 299.97273 * 1 2 3 20 20 H 1.09011 * 109.46982 * 59.97379 * 1 2 3 21 21 H 1.09002 * 109.47436 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.46897 * 180.02562 * 3 2 1 23 23 H 1.09000 * 109.46893 * 300.03088 * 3 2 1 24 24 H 1.09004 * 109.47002 * 60.02467 * 3 2 1 25 25 H 1.09002 * 109.52401 * 57.68445 * 4 2 1 26 26 H 1.09004 * 109.52068 * 297.56090 * 4 2 1 27 27 H 1.08995 * 109.54674 * 62.85906 * 5 4 2 28 28 H 1.09007 * 109.53937 * 183.03159 * 5 4 2 29 29 H 1.08995 * 109.46815 * 294.99983 * 8 6 5 30 30 H 1.09000 * 109.46941 * 55.00251 * 8 6 5 31 31 H 0.96998 * 120.00318 * 180.02562 * 12 11 9 32 32 H 1.08997 * 109.47580 * 62.37620 * 17 6 5 33 33 H 1.08996 * 109.48015 * 182.39657 * 17 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0405 1.4423 0.0000 4 6 2.0405 -0.7223 1.2495 5 6 3.5711 -0.7709 1.2137 6 6 4.0190 -1.4606 -0.0785 7 1 3.6627 -2.4907 -0.0840 8 6 5.5466 -1.4476 -0.1620 9 6 5.9904 -2.2323 -1.3696 10 1 5.2563 -2.6945 -2.0130 11 6 7.3336 -2.3603 -1.6532 12 7 7.7209 -3.0447 -2.7073 13 14 8.6034 -1.5603 -0.5409 14 1 8.9929 -2.5121 0.5303 15 1 9.8014 -1.1961 -1.3392 16 1 8.0251 -0.3366 0.0704 17 6 3.4333 -0.7103 -1.2777 18 8 2.0091 -0.6751 -1.1664 19 1 -0.3633 0.5134 0.8902 20 1 -0.3633 0.5143 -0.8898 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1305 1.4419 -0.0005 23 1 1.6769 1.9564 -0.8897 24 1 1.6777 1.9562 0.8902 25 1 1.6442 -1.7375 1.2709 26 1 1.7138 -0.1849 2.1399 27 1 3.9689 0.2435 1.2425 28 1 3.9383 -1.3310 2.0737 29 1 5.8970 -0.4191 -0.2483 30 1 5.9636 -1.8992 0.7381 31 1 8.6659 -3.1350 -2.9066 32 1 3.8219 0.3079 -1.2943 33 1 3.7137 -1.2215 -2.1986 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259508560.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:27 Heat of formation + Delta-G solvation = -93.124539 kcal Electronic energy + Delta-G solvation = -13310.982151 eV Core-core repulsion = 11141.875910 eV Total energy + Delta-G solvation = -2169.106241 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.89931 -36.31332 -34.61914 -34.22908 -30.86846 -28.58515 -27.67236 -25.52659 -23.59005 -21.77544 -20.02011 -18.88118 -17.06453 -16.70406 -16.38047 -15.95618 -15.12409 -14.76340 -14.49509 -14.42314 -13.55941 -13.40506 -13.19948 -13.16905 -12.88354 -12.67222 -12.52594 -12.29755 -11.94232 -11.82493 -11.60830 -11.51592 -11.02318 -10.82717 -10.75167 -10.14733 -8.28403 -6.32274 1.35202 1.36926 1.48806 2.36022 2.91858 3.07585 3.86216 3.92127 3.98127 4.06323 4.20479 4.40450 4.52098 4.65443 4.70526 4.83112 4.88115 4.91088 4.94823 5.04143 5.08557 5.09148 5.18371 5.25789 5.35717 5.42757 5.50201 5.63469 5.68960 6.29384 6.46789 6.75276 7.31904 8.88387 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.060665 B = 0.009044 C = 0.008569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.442561 B = 3095.264836 C = 3266.723077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.093 3.907 3 C -0.176 4.176 4 C -0.135 4.135 5 C -0.117 4.117 6 C -0.103 4.103 7 H 0.047 0.953 8 C -0.003 4.003 9 C -0.528 4.528 10 H 0.032 0.968 11 C 0.003 3.997 12 N -0.952 5.952 13 Si 0.950 3.050 14 H -0.268 1.268 15 H -0.285 1.285 16 H -0.245 1.245 17 C 0.082 3.918 18 O -0.400 6.400 19 H 0.095 0.905 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.052 0.948 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.060 0.940 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.265 0.735 32 H 0.052 0.948 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 9.446 10.054 17.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.233 4.233 4 C -0.173 4.173 5 C -0.154 4.154 6 C -0.121 4.121 7 H 0.066 0.934 8 C -0.040 4.040 9 C -0.566 4.566 10 H 0.050 0.950 11 C -0.194 4.194 12 N -0.593 5.593 13 Si 0.773 3.227 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.168 1.168 17 C 0.006 3.994 18 O -0.321 6.321 19 H 0.114 0.886 20 H 0.079 0.921 21 H 0.075 0.925 22 H 0.071 0.929 23 H 0.078 0.922 24 H 0.108 0.892 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.349 9.318 9.828 17.670 hybrid contribution 1.186 -0.238 -0.140 1.217 sum -10.164 9.080 9.688 16.721 Atomic orbital electron populations 1.21760 0.91042 1.02703 1.03396 1.21851 0.95787 0.91747 0.85189 1.22420 1.01642 0.95816 1.03422 1.22162 0.95187 1.01303 0.98598 1.21723 0.96118 1.00941 0.96656 1.21524 0.96024 0.98818 0.95783 0.93425 1.19503 0.93096 0.96166 0.95255 1.21475 0.92363 1.32385 1.10331 0.94987 1.26034 1.01137 0.95534 0.96685 1.70075 1.16687 1.43299 1.29258 0.85662 0.77943 0.80231 0.78834 1.19270 1.21048 1.16800 1.22365 0.79811 0.99013 0.98249 1.87923 1.21408 1.78123 1.44601 0.88602 0.92100 0.92521 0.92875 0.92178 0.89211 0.92084 0.88419 0.91131 0.91236 0.95976 0.96153 0.92569 0.92943 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 8.85 71.98 0.64 -2.13 16 2 C 0.09 2.51 1.11 -10.76 -0.01 2.49 16 3 C -0.18 -4.13 7.94 71.98 0.57 -3.56 16 4 C -0.13 -3.45 4.92 30.68 0.15 -3.30 16 5 C -0.12 -3.59 5.00 30.71 0.15 -3.44 16 6 C -0.10 -4.15 2.33 -10.70 -0.02 -4.18 16 7 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 8 C 0.00 -0.13 3.52 29.85 0.11 -0.03 16 9 C -0.53 -30.77 9.00 25.60 0.23 -30.54 16 10 H 0.03 2.07 7.32 -2.91 -0.02 2.05 16 11 C 0.00 0.15 5.47 84.66 0.46 0.61 16 12 N -0.95 -60.64 13.96 21.45 0.30 -60.34 16 13 Si 0.95 44.52 27.47 68.60 1.88 46.40 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 16 H -0.24 -10.53 6.54 99.48 0.65 -9.88 16 17 C 0.08 3.31 5.58 72.01 0.40 3.71 16 18 O -0.40 -14.64 10.24 -148.98 -1.53 -16.17 16 19 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.05 1.40 4.98 -2.39 -0.01 1.39 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 27 H 0.07 2.03 6.62 -2.39 -0.02 2.01 16 28 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 30 H 0.02 0.93 7.57 -2.39 -0.02 0.91 16 31 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 32 H 0.05 2.00 6.34 -2.39 -0.02 1.98 16 33 H 0.07 3.16 7.05 -2.39 -0.02 3.15 16 Total: -1.00 -66.64 254.82 4.34 -62.30 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 1.00 Total: 8.16 kcal Atomic # 6 Polarization: -43.03 SS G_CDS: 2.68 Total: -40.36 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: 0.30 Total: -60.34 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -1.53 Total: -16.17 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.40 kcal Total: -66.64 4.34 -62.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259508560.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.826 kcal (2) G-P(sol) polarization free energy of solvation -66.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds