Wall clock time and date at job start Mon Mar 30 2020 02:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.46957 * 59.99736 * 6 5 4 9 9 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 10 10 H 1.09001 * 109.47369 * 299.99416 * 9 6 5 11 11 C 1.53005 * 109.46542 * 179.97438 * 9 6 5 12 12 C 1.50697 * 109.47269 * 65.00223 * 11 9 6 13 13 H 1.07994 * 120.00083 * 359.97438 * 12 11 9 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99960 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99815 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46950 * 90.00098 * 16 14 12 18 18 H 1.48502 * 109.46954 * 209.99938 * 16 14 12 19 19 H 1.48496 * 109.47448 * 330.00192 * 16 14 12 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 28 28 H 0.96698 * 114.00131 * 60.00553 * 8 6 5 29 29 H 1.09000 * 109.46692 * 184.99966 * 11 9 6 30 30 H 1.09003 * 109.47072 * 304.99573 * 11 9 6 31 31 H 0.96999 * 120.00368 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 1 5.1706 -1.4408 -0.0005 8 8 3.6047 -2.7890 -0.0002 9 6 3.5705 -0.7203 1.2488 10 1 3.9335 0.3075 1.2487 11 6 4.0806 -1.4416 2.4980 12 6 5.5825 -1.3352 2.5615 13 1 6.1195 -0.8064 1.7880 14 6 6.2710 -1.9130 3.6071 15 7 5.6170 -2.5565 4.5492 16 14 8.1327 -1.7817 3.6854 17 1 8.5115 -0.5589 4.4381 18 1 8.6848 -2.9768 4.3725 19 1 8.6820 -1.7050 2.3078 20 6 2.0400 -0.7212 1.2491 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -1.7489 -1.2494 25 1 1.6767 -0.2073 -2.1392 26 1 3.9330 0.3072 -1.2498 27 1 3.9333 -1.2348 -2.1395 28 1 3.8901 -3.3070 -0.7653 29 1 3.6460 -0.9821 3.3857 30 1 3.7922 -2.4919 2.4543 31 1 6.1012 -2.9627 5.2850 32 1 1.6767 -0.2074 2.1392 33 1 1.6768 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259524407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:14 Heat of formation + Delta-G solvation = -89.985520 kcal Electronic energy + Delta-G solvation = -13308.963346 eV Core-core repulsion = 11139.993223 eV Total energy + Delta-G solvation = -2168.970123 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.88300 -34.98026 -33.41770 -31.30464 -30.64931 -26.85252 -25.47576 -22.99897 -21.51355 -19.68781 -18.93656 -16.49090 -15.76253 -15.12151 -14.41153 -14.28202 -13.61770 -13.30601 -12.77749 -12.48466 -12.11880 -11.71835 -11.63134 -11.30613 -10.96424 -10.88903 -10.74887 -10.60472 -10.31931 -10.08686 -9.92176 -9.47178 -9.23005 -8.85774 -8.66308 -8.24408 -5.90273 -3.91223 3.35437 3.41655 3.44142 4.51915 4.98612 5.09920 5.21171 5.31493 5.44546 5.56972 5.65579 5.87498 5.99997 6.01453 6.04120 6.13621 6.21310 6.26517 6.29221 6.44265 6.60124 6.70094 6.81268 6.98662 7.15483 7.25226 7.79372 7.99763 8.16776 8.42303 8.53180 9.15634 9.70816 11.21203 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053692 B = 0.009374 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.363260 B = 2986.414081 C = 3201.055305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.061 0.939 4 C -0.105 4.105 5 C -0.155 4.155 6 C 0.119 3.881 7 H 0.059 0.941 8 O -0.552 6.552 9 C -0.072 4.072 10 H 0.062 0.938 11 C 0.029 3.971 12 C -0.513 4.513 13 H 0.052 0.948 14 C 0.056 3.944 15 N -0.895 5.895 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.105 4.105 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.359 0.641 29 H 0.012 0.988 30 H 0.028 0.972 31 H 0.258 0.742 32 H 0.052 0.948 33 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 3.476 -10.644 12.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.080 0.920 4 C -0.142 4.142 5 C -0.193 4.193 6 C 0.060 3.940 7 H 0.077 0.923 8 O -0.355 6.355 9 C -0.091 4.091 10 H 0.080 0.920 11 C -0.008 4.008 12 C -0.551 4.551 13 H 0.070 0.930 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.142 4.142 21 H 0.070 0.930 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.203 0.797 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.414 3.580 -9.909 12.335 hybrid contribution 1.397 -0.070 -0.428 1.463 sum -5.017 3.511 -10.337 12.014 Atomic orbital electron populations 1.21817 0.96069 1.01457 1.00808 1.21166 0.94667 0.99294 0.96048 0.92005 1.21446 0.95255 1.00793 0.96717 1.22345 0.96592 1.01370 0.98969 1.21766 0.97183 0.81475 0.93590 0.92296 1.86610 1.77089 1.23625 1.48180 1.21222 0.93318 0.98390 0.96150 0.91960 1.19081 0.95102 0.96242 0.90371 1.21243 0.92445 1.33719 1.07709 0.93014 1.25000 0.97979 0.95552 0.95931 1.69969 1.35244 1.36207 1.12036 0.86676 0.86338 0.77437 0.77990 1.20810 1.21312 1.20060 1.21609 0.96674 1.00393 0.95552 0.92978 0.92873 0.93505 0.91650 0.93329 0.91731 0.92790 0.79690 0.97010 0.95358 0.93181 0.92900 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.19 37.16 0.34 -1.51 16 2 C -0.09 -1.40 2.72 -90.62 -0.25 -1.65 16 3 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 4 C -0.10 -1.48 5.06 -26.73 -0.14 -1.62 16 5 C -0.15 -2.32 5.64 -26.73 -0.15 -2.47 16 6 C 0.12 2.25 3.02 -26.73 -0.08 2.17 16 7 H 0.06 1.22 6.95 -51.93 -0.36 0.86 16 8 O -0.55 -10.56 11.21 -35.23 -0.39 -10.96 16 9 C -0.07 -1.54 1.97 -90.59 -0.18 -1.71 16 10 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 11 C 0.03 0.78 4.37 -27.88 -0.12 0.66 16 12 C -0.51 -14.69 8.41 -34.44 -0.29 -14.98 16 13 H 0.05 1.43 7.05 -52.49 -0.37 1.06 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -27.63 13.29 55.43 0.74 -26.89 16 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 C -0.10 -1.94 4.34 -26.71 -0.12 -2.05 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.06 0.96 7.68 -51.93 -0.40 0.56 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.36 5.16 9.08 45.56 0.41 5.57 16 29 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.03 0.83 7.54 -51.93 -0.39 0.44 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.29 7.68 -51.93 -0.40 0.89 16 LS Contribution 261.24 15.07 3.94 3.94 Total: -1.00 -31.29 261.24 -6.69 -37.98 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -4.87 Total: 0.54 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: -1.07 Total: -21.63 kcal Atomic # 7 Polarization: -27.63 SS G_CDS: 0.74 Total: -26.89 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: -0.39 Total: -10.96 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.29 -6.69 -37.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.005 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds