Wall clock time and date at job start Mon Mar 30 2020 02:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47452 * 59.99878 * 5 4 2 7 7 H 1.09000 * 109.47360 * 180.02562 * 6 5 4 8 8 O 1.42897 * 109.46957 * 59.99736 * 6 5 4 9 9 C 1.53006 * 109.46542 * 300.00026 * 6 5 4 10 10 H 1.09001 * 109.47369 * 299.99416 * 9 6 5 11 11 C 1.53005 * 109.46542 * 179.97438 * 9 6 5 12 12 C 1.50697 * 109.47269 * 65.00223 * 11 9 6 13 13 H 1.07994 * 120.00083 * 359.97438 * 12 11 9 14 14 C 1.37882 * 119.99937 * 179.97438 * 12 11 9 15 15 N 1.31509 * 119.99960 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99815 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46950 * 90.00098 * 16 14 12 18 18 H 1.48502 * 109.46954 * 209.99938 * 16 14 12 19 19 H 1.48496 * 109.47448 * 330.00192 * 16 14 12 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 25 25 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 26 26 H 1.09001 * 109.47289 * 299.99953 * 5 4 2 27 27 H 1.09002 * 109.47153 * 179.97438 * 5 4 2 28 28 H 0.96698 * 114.00131 * 60.00553 * 8 6 5 29 29 H 1.09000 * 109.46692 * 184.99966 * 11 9 6 30 30 H 1.09003 * 109.47072 * 304.99573 * 11 9 6 31 31 H 0.96999 * 120.00368 * 180.02562 * 15 14 12 32 32 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 6 4.0806 -1.4416 -0.0005 7 1 5.1706 -1.4408 -0.0005 8 8 3.6047 -2.7890 -0.0002 9 6 3.5705 -0.7203 1.2488 10 1 3.9335 0.3075 1.2487 11 6 4.0806 -1.4416 2.4980 12 6 5.5825 -1.3352 2.5615 13 1 6.1195 -0.8064 1.7880 14 6 6.2710 -1.9130 3.6071 15 7 5.6170 -2.5565 4.5492 16 14 8.1327 -1.7817 3.6854 17 1 8.5115 -0.5589 4.4381 18 1 8.6848 -2.9768 4.3725 19 1 8.6820 -1.7050 2.3078 20 6 2.0400 -0.7212 1.2491 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -1.7489 -1.2494 25 1 1.6767 -0.2073 -2.1392 26 1 3.9330 0.3072 -1.2498 27 1 3.9333 -1.2348 -2.1395 28 1 3.8901 -3.3070 -0.7653 29 1 3.6460 -0.9821 3.3857 30 1 3.7922 -2.4919 2.4543 31 1 6.1012 -2.9627 5.2850 32 1 1.6767 -0.2074 2.1392 33 1 1.6768 -1.7489 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259524407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:14 Heat of formation + Delta-G solvation = -110.942440 kcal Electronic energy + Delta-G solvation = -13309.872106 eV Core-core repulsion = 11139.993223 eV Total energy + Delta-G solvation = -2169.878883 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.32579 -36.36662 -35.47099 -33.19148 -31.91140 -28.77449 -26.76352 -24.97508 -22.89837 -21.14339 -20.50510 -18.48921 -17.47448 -16.68304 -16.23144 -15.76686 -14.96885 -14.67263 -14.33936 -14.00225 -13.83306 -13.48580 -13.02243 -12.90148 -12.61433 -12.51620 -12.27567 -12.13621 -11.95342 -11.69290 -11.45297 -11.19452 -10.95824 -10.65312 -10.47527 -10.27362 -8.16091 -6.26115 1.38059 1.40193 1.50656 2.41495 3.16442 3.61902 3.88645 3.94731 4.05399 4.31083 4.37408 4.56837 4.64260 4.70881 4.80536 4.88621 4.94761 5.04140 5.11586 5.22137 5.25708 5.33178 5.40507 5.47714 5.50766 5.59297 5.67133 5.80270 5.96722 6.29007 6.89757 7.15317 7.41479 8.96265 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.053692 B = 0.009374 C = 0.008745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.363260 B = 2986.414081 C = 3201.055305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.101 4.101 5 C -0.145 4.145 6 C 0.120 3.880 7 H 0.037 0.963 8 O -0.574 6.574 9 C -0.072 4.072 10 H 0.063 0.937 11 C 0.037 3.963 12 C -0.528 4.528 13 H 0.060 0.940 14 C -0.005 4.005 15 N -0.937 5.937 16 Si 0.963 3.037 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.262 1.262 20 C -0.099 4.099 21 H 0.052 0.948 22 H 0.049 0.951 23 H 0.071 0.929 24 H 0.058 0.942 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.080 0.920 28 H 0.379 0.621 29 H -0.022 1.022 30 H -0.010 1.010 31 H 0.261 0.739 32 H 0.043 0.957 33 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.790 4.503 -12.826 14.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 H 0.088 0.912 4 C -0.139 4.139 5 C -0.182 4.182 6 C 0.061 3.939 7 H 0.055 0.945 8 O -0.380 6.380 9 C -0.090 4.090 10 H 0.082 0.918 11 C 0.000 4.000 12 C -0.566 4.566 13 H 0.078 0.922 14 C -0.202 4.202 15 N -0.578 5.578 16 Si 0.788 3.212 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.186 1.186 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.227 0.773 29 H -0.004 1.004 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.046 4.610 -12.118 14.306 hybrid contribution 1.253 -0.431 0.297 1.358 sum -4.793 4.180 -11.821 13.424 Atomic orbital electron populations 1.21778 0.94186 1.01707 1.02103 1.21148 0.96266 0.99088 0.94336 0.91245 1.21448 0.94417 1.00725 0.97269 1.22239 0.97253 1.01407 0.97324 1.21632 0.95884 0.81857 0.94503 0.94534 1.86564 1.77266 1.24192 1.49969 1.21124 0.95276 0.97857 0.94758 0.91842 1.18918 0.94733 0.94314 0.92024 1.21638 0.93437 1.33587 1.07939 0.92154 1.26009 1.03747 0.95029 0.95447 1.70127 1.37581 1.37246 1.12826 0.85475 0.79393 0.77669 0.78666 1.19767 1.20952 1.18577 1.21522 0.94660 0.99828 0.97669 0.92931 0.93181 0.91010 0.92274 0.90212 0.90878 0.90178 0.77321 1.00390 0.99116 0.93025 0.93828 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 9.19 71.98 0.66 -2.58 16 2 C -0.09 -2.50 2.72 -10.79 -0.03 -2.53 16 3 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 4 C -0.10 -2.53 5.06 30.60 0.15 -2.38 16 5 C -0.14 -3.90 5.64 30.60 0.17 -3.73 16 6 C 0.12 4.49 3.02 30.60 0.09 4.59 16 7 H 0.04 1.51 6.95 -2.39 -0.02 1.50 16 8 O -0.57 -21.94 11.21 -148.98 -1.67 -23.61 16 9 C -0.07 -3.10 1.97 -10.77 -0.02 -3.12 16 10 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 11 C 0.04 2.09 4.37 29.85 0.13 2.22 16 12 C -0.53 -30.96 8.41 25.60 0.22 -30.75 16 13 H 0.06 3.35 7.05 -2.91 -0.02 3.33 16 14 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 15 N -0.94 -59.61 13.29 21.45 0.28 -59.33 16 16 Si 0.96 45.50 29.54 68.60 2.03 47.53 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 20 C -0.10 -3.71 4.34 30.61 0.13 -3.57 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 24 H 0.06 1.58 7.68 -2.39 -0.02 1.56 16 25 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.38 10.54 9.08 -74.06 -0.67 9.87 16 29 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 30 H -0.01 -0.60 7.54 -2.39 -0.02 -0.62 16 31 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 32 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 Total: -1.00 -69.35 261.24 3.00 -66.35 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.39 Total: 10.78 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 1.97 Total: -41.71 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: 0.28 Total: -59.33 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -1.67 Total: -23.61 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -69.35 3.00 -66.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.597 kcal (2) G-P(sol) polarization free energy of solvation -69.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds