Wall clock time and date at job start Mon Mar 30 2020 02:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.52997 * 109.47592 * 300.00035 * 4 2 1 6 6 C 1.52997 * 109.47232 * 300.00195 * 5 4 2 7 7 H 1.08996 * 109.47853 * 179.97438 * 6 5 4 8 8 O 1.42905 * 109.47264 * 299.99908 * 6 5 4 9 9 C 1.52999 * 109.47317 * 59.99633 * 6 5 4 10 10 H 1.09002 * 109.46716 * 60.00091 * 9 6 5 11 11 C 1.53002 * 109.47628 * 180.02562 * 9 6 5 12 12 C 1.50698 * 109.46833 * 295.00207 * 11 9 6 13 13 H 1.08007 * 120.00343 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99886 * 179.97438 * 12 11 9 15 15 N 1.31518 * 119.99944 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 119.99857 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47141 * 89.99801 * 16 14 12 18 18 H 1.48496 * 109.46806 * 209.99719 * 16 14 12 19 19 H 1.48501 * 109.46963 * 329.99537 * 16 14 12 20 20 C 1.52997 * 109.47127 * 119.99989 * 2 1 3 21 21 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47160 * 60.00369 * 4 2 1 25 25 H 1.09002 * 109.46719 * 180.02562 * 4 2 1 26 26 H 1.09002 * 109.47045 * 60.00253 * 5 4 2 27 27 H 1.09001 * 109.47375 * 180.02562 * 5 4 2 28 28 H 0.96696 * 114.00036 * 299.99911 * 8 6 5 29 29 H 1.09000 * 109.46519 * 54.99870 * 11 9 6 30 30 H 1.08998 * 109.47254 * 175.00241 * 11 9 6 31 31 H 0.97000 * 119.99777 * 179.97438 * 15 14 12 32 32 H 1.09002 * 109.47153 * 179.97438 * 20 2 1 33 33 H 1.09001 * 109.47289 * 299.99953 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.5299 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 1 1.6763 -3.9126 0.0004 8 8 3.4690 -2.8851 0.0001 9 6 1.5301 -2.1638 1.2493 10 1 0.4400 -2.1638 1.2493 11 6 2.0406 -2.8846 2.4986 12 6 1.4401 -4.2653 2.5624 13 1 0.7625 -4.5959 1.7891 14 6 1.7566 -5.1071 3.6076 15 7 1.2322 -6.3119 3.6636 16 14 2.9291 -4.5357 4.9448 17 1 2.1584 -3.8806 6.0322 18 1 3.6624 -5.7049 5.4929 19 1 3.8986 -3.5673 4.3724 20 6 2.0401 -0.7212 1.2492 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -0.2076 -2.1392 25 1 3.1300 -0.7218 -1.2490 26 1 0.4399 -2.1638 -1.2492 27 1 1.8936 -2.6779 -2.1389 28 1 3.8623 -3.3268 -0.7649 29 1 3.1269 -2.9625 2.4546 30 1 1.7522 -2.3216 3.3863 31 1 1.4551 -6.9042 4.3987 32 1 3.1301 -0.7216 1.2490 33 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259524411.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:16 Heat of formation + Delta-G solvation = -82.622788 kcal Electronic energy + Delta-G solvation = -13488.991505 eV Core-core repulsion = 11320.340655 eV Total energy + Delta-G solvation = -2168.650851 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.20426 -35.06089 -33.40427 -31.40420 -30.20648 -27.20558 -26.24646 -22.72211 -21.80164 -19.81756 -18.33766 -16.66941 -15.96536 -15.10832 -14.54527 -14.16779 -13.98803 -13.26934 -12.80627 -12.71402 -12.35571 -11.85885 -11.52503 -11.44949 -11.17441 -11.04135 -10.70804 -10.54397 -10.22054 -10.04895 -9.59193 -9.52299 -9.38383 -8.97397 -8.76957 -8.43575 -5.96362 -3.92078 3.37538 3.44609 3.52289 4.54388 4.91892 5.08639 5.16773 5.26005 5.39299 5.57420 5.64715 5.75505 5.92025 5.97753 6.05380 6.09453 6.16638 6.19697 6.26828 6.45283 6.56288 6.59232 6.74382 6.90631 6.96418 7.07246 7.40363 7.66609 7.90797 8.35819 8.61691 9.07604 9.67896 11.17147 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047788 B = 0.010576 C = 0.010188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.785871 B = 2646.873707 C = 2747.571453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.091 4.091 3 H 0.059 0.941 4 C -0.106 4.106 5 C -0.156 4.156 6 C 0.117 3.883 7 H 0.065 0.935 8 O -0.556 6.556 9 C -0.064 4.064 10 H 0.072 0.928 11 C -0.009 4.009 12 C -0.511 4.511 13 H 0.069 0.931 14 C 0.064 3.936 15 N -0.908 5.908 16 Si 0.878 3.122 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.109 4.109 21 H 0.064 0.936 22 H 0.051 0.949 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.361 0.639 29 H 0.027 0.973 30 H 0.007 0.993 31 H 0.261 0.739 32 H 0.064 0.936 33 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 10.547 -8.680 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.109 4.109 3 H 0.077 0.923 4 C -0.143 4.143 5 C -0.194 4.194 6 C 0.059 3.941 7 H 0.082 0.918 8 O -0.360 6.360 9 C -0.082 4.082 10 H 0.090 0.910 11 C -0.047 4.047 12 C -0.548 4.548 13 H 0.087 0.913 14 C -0.136 4.136 15 N -0.548 5.548 16 Si 0.706 3.294 17 H -0.205 1.205 18 H -0.216 1.216 19 H -0.188 1.188 20 C -0.146 4.146 21 H 0.083 0.917 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.206 0.794 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.170 10.717 -8.002 13.426 hybrid contribution 0.575 -0.190 0.221 0.645 sum 1.745 10.527 -7.782 13.207 Atomic orbital electron populations 1.21948 0.95835 1.02322 1.00670 1.21091 0.95521 0.98444 0.95868 0.92262 1.21424 1.00840 0.95285 0.96764 1.22366 1.01503 0.96605 0.98877 1.21773 0.80353 0.98525 0.93461 0.91758 1.86556 1.20118 1.80869 1.48447 1.21055 0.99163 0.92748 0.95235 0.90988 1.19582 0.97357 0.95652 0.92064 1.21149 1.27371 0.97059 1.09271 0.91252 1.25006 0.95852 0.94764 0.97956 1.69923 1.44849 1.07633 1.32418 0.86789 0.81973 0.78363 0.82256 1.20528 1.21609 1.18845 1.21612 1.01012 0.96119 0.95895 0.91717 0.93037 0.93601 0.93196 0.91749 0.91240 0.92741 0.79417 0.95459 0.97469 0.92951 0.91720 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 8.50 37.16 0.32 -1.70 16 2 C -0.09 -1.30 3.20 -90.62 -0.29 -1.59 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -1.45 5.31 -26.73 -0.14 -1.59 16 5 C -0.16 -2.29 5.36 -26.73 -0.14 -2.43 16 6 C 0.12 2.19 3.02 -26.73 -0.08 2.11 16 7 H 0.06 1.35 6.95 -51.93 -0.36 0.99 16 8 O -0.56 -10.25 11.21 -35.23 -0.39 -10.65 16 9 C -0.06 -1.29 1.70 -90.62 -0.15 -1.44 16 10 H 0.07 1.47 6.43 -51.93 -0.33 1.13 16 11 C -0.01 -0.23 3.44 -27.88 -0.10 -0.33 16 12 C -0.51 -14.70 8.96 -34.44 -0.31 -15.01 16 13 H 0.07 2.11 7.30 -52.48 -0.38 1.73 16 14 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 15 N -0.91 -28.48 13.96 55.43 0.77 -27.71 16 16 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 17 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.26 -6.65 6.54 56.52 0.37 -6.28 16 20 C -0.11 -1.90 4.59 -26.73 -0.12 -2.02 16 21 H 0.06 0.93 4.81 -51.93 -0.25 0.68 16 22 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 23 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.91 7.68 -51.93 -0.40 0.51 16 26 H 0.07 1.00 6.43 -51.93 -0.33 0.67 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.36 5.02 9.08 45.56 0.41 5.43 16 29 H 0.03 0.71 6.59 -51.93 -0.34 0.37 16 30 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.06 1.19 7.68 -51.93 -0.40 0.79 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 250.60 15.07 3.78 3.78 Total: -1.00 -31.52 250.60 -6.12 -37.63 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.48 Total: 1.21 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: -1.12 Total: -22.18 kcal Atomic # 7 Polarization: -28.48 SS G_CDS: 0.77 Total: -27.71 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: -0.39 Total: -10.65 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -31.52 -6.12 -37.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524411.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.990 kcal (2) G-P(sol) polarization free energy of solvation -31.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds