Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 7 7 H 1.09002 * 109.47596 * 60.00070 * 6 5 4 8 8 O 1.42903 * 109.47444 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47128 * 300.00123 * 6 5 4 10 10 H 1.09002 * 109.47097 * 299.99925 * 9 6 5 11 11 C 1.52999 * 109.47628 * 180.02562 * 9 6 5 12 12 C 1.50696 * 109.47243 * 64.99777 * 11 9 6 13 13 H 1.08008 * 119.99889 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00315 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00343 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99546 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47539 * 90.00335 * 16 14 12 18 18 H 1.48508 * 109.46741 * 210.00217 * 16 14 12 19 19 H 1.48498 * 109.47186 * 329.99920 * 16 14 12 20 20 C 1.52997 * 109.46978 * 59.99726 * 9 6 5 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 27 27 H 1.08996 * 109.47747 * 179.97438 * 5 4 2 28 28 H 0.96698 * 113.99903 * 300.00057 * 8 6 5 29 29 H 1.08995 * 109.47075 * 185.00067 * 11 9 6 30 30 H 1.09007 * 109.46669 * 304.99824 * 11 9 6 31 31 H 0.96992 * 119.99891 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.47140 * 180.02562 * 20 9 6 33 33 H 1.09002 * 109.47497 * 60.00450 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 1 3.7157 -2.4711 0.0001 8 8 5.5085 -1.4436 0.0008 9 6 3.5695 -0.7223 1.2495 10 1 3.9333 0.3053 1.2498 11 6 4.0795 -1.4435 2.4988 12 6 5.5814 -1.3372 2.5623 13 1 6.1184 -0.8078 1.7891 14 6 6.2699 -1.9158 3.6073 15 7 7.5807 -1.8235 3.6625 16 14 5.3410 -2.8320 4.9442 17 1 5.2104 -4.2618 4.5653 18 1 6.0844 -2.7253 6.2254 19 1 3.9899 -2.2370 5.1049 20 6 2.0395 -0.7216 1.2492 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6766 -1.7489 -1.2492 25 1 1.6767 -0.2075 -2.1392 26 1 3.9336 0.3056 -1.2488 27 1 3.9333 -1.2361 -2.1387 28 1 5.9020 -1.8851 -0.7642 29 1 3.6449 -0.9839 3.3865 30 1 3.7910 -2.4938 2.4552 31 1 8.0649 -2.2302 4.3979 32 1 1.6762 -0.2074 2.1390 33 1 1.6757 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259524414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = -80.723291 kcal Electronic energy + Delta-G solvation = -13324.394256 eV Core-core repulsion = 11155.825773 eV Total energy + Delta-G solvation = -2168.568482 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.88319 -35.31085 -33.25102 -31.41652 -30.73793 -27.35269 -25.34209 -22.65868 -21.55961 -19.66439 -19.25471 -16.78280 -16.07570 -14.90940 -14.35411 -14.07895 -13.71128 -13.55842 -12.70217 -12.60923 -12.37968 -11.77108 -11.71577 -11.49882 -11.19071 -11.02055 -10.77862 -10.53890 -10.34127 -10.13696 -9.79086 -9.47625 -9.23369 -8.94127 -8.59830 -8.30450 -5.78690 -3.71108 3.41344 3.48671 3.52019 4.62529 4.84470 4.98865 5.03032 5.30222 5.43795 5.48575 5.59010 5.72031 5.82931 5.86855 5.90906 5.94691 6.02084 6.12558 6.24317 6.26406 6.51402 6.55359 6.58954 6.68752 6.90698 7.00326 7.37027 7.54485 8.01517 8.59977 8.86796 9.48137 9.84591 11.35039 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045536 B = 0.010735 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.753299 B = 2607.749640 C = 3068.957268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.068 0.932 4 C -0.108 4.108 5 C -0.154 4.154 6 C 0.119 3.881 7 H 0.040 0.960 8 O -0.519 6.519 9 C -0.068 4.068 10 H 0.068 0.932 11 C -0.008 4.008 12 C -0.486 4.486 13 H 0.099 0.901 14 C 0.058 3.942 15 N -0.911 5.911 16 Si 0.868 3.132 17 H -0.282 1.282 18 H -0.291 1.291 19 H -0.269 1.269 20 C -0.110 4.110 21 H 0.053 0.947 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.346 0.654 29 H 0.012 0.988 30 H 0.006 0.994 31 H 0.257 0.743 32 H 0.062 0.938 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 1.532 -8.935 15.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.114 4.114 3 H 0.087 0.913 4 C -0.146 4.146 5 C -0.192 4.192 6 C 0.059 3.941 7 H 0.058 0.942 8 O -0.321 6.321 9 C -0.086 4.086 10 H 0.086 0.914 11 C -0.046 4.046 12 C -0.524 4.524 13 H 0.116 0.884 14 C -0.141 4.141 15 N -0.553 5.553 16 Si 0.697 3.303 17 H -0.208 1.208 18 H -0.217 1.217 19 H -0.194 1.194 20 C -0.147 4.147 21 H 0.072 0.928 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.191 0.809 29 H 0.031 0.969 30 H 0.024 0.976 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.116 1.808 -8.252 14.771 hybrid contribution -0.353 -0.941 0.244 1.034 sum -12.469 0.867 -8.009 14.845 Atomic orbital electron populations 1.21827 0.95828 1.01466 1.01147 1.21194 0.94788 0.99892 0.95510 0.91320 1.21500 0.95421 1.00367 0.97267 1.22376 0.95801 1.02028 0.98997 1.21622 0.82289 0.96750 0.93392 0.94229 1.87217 1.17827 1.80587 1.46510 1.21049 0.91987 1.00275 0.95316 0.91373 1.19629 0.98076 0.94561 0.92298 1.21434 0.89444 1.33321 1.08213 0.88358 1.25033 0.94670 0.96581 0.97772 1.69917 1.06331 1.46725 1.32284 0.86968 0.80515 0.80629 0.82233 1.20788 1.21742 1.19379 1.21697 0.96346 1.00033 0.96660 0.92836 0.93208 0.92928 0.92275 0.92579 0.91557 0.92634 0.80949 0.96930 0.97600 0.93324 0.91947 0.92447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.19 37.16 0.34 -1.28 16 2 C -0.10 -1.28 2.72 -90.62 -0.25 -1.53 16 3 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 4 C -0.11 -1.39 5.20 -26.74 -0.14 -1.53 16 5 C -0.15 -2.26 5.55 -26.73 -0.15 -2.41 16 6 C 0.12 2.21 2.90 -26.73 -0.08 2.14 16 7 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 8 O -0.52 -11.11 9.83 -35.23 -0.35 -11.45 16 9 C -0.07 -1.37 2.04 -90.62 -0.18 -1.56 16 10 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 11 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 12 C -0.49 -14.29 8.38 -34.44 -0.29 -14.57 16 13 H 0.10 3.13 5.97 -52.48 -0.31 2.82 16 14 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 15 N -0.91 -29.27 13.96 55.43 0.77 -28.50 16 16 Si 0.87 22.64 27.47 -169.99 -4.67 17.97 16 17 H -0.28 -7.25 7.11 56.52 0.40 -6.84 16 18 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 19 H -0.27 -6.74 6.54 56.52 0.37 -6.37 16 20 C -0.11 -1.78 4.48 -26.73 -0.12 -1.90 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.35 5.76 9.08 45.56 0.41 6.18 16 29 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 30 H 0.01 0.14 7.57 -51.93 -0.39 -0.25 16 31 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 257.30 15.07 3.88 3.88 Total: -1.00 -32.58 257.30 -6.33 -38.91 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -4.91 Total: 0.48 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -1.06 Total: -21.29 kcal Atomic # 7 Polarization: -29.27 SS G_CDS: 0.77 Total: -28.50 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: -0.35 Total: -11.45 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.58 -6.33 -38.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.812 kcal (2) G-P(sol) polarization free energy of solvation -32.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds