Wall clock time and date at job start Mon Mar 30 2020 02:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 C 1.52992 * 109.47482 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.47106 * 60.00162 * 5 4 2 7 7 H 1.09002 * 109.47596 * 60.00070 * 6 5 4 8 8 O 1.42903 * 109.47444 * 180.02562 * 6 5 4 9 9 C 1.53002 * 109.47128 * 300.00123 * 6 5 4 10 10 H 1.09002 * 109.47097 * 299.99925 * 9 6 5 11 11 C 1.52999 * 109.47628 * 180.02562 * 9 6 5 12 12 C 1.50696 * 109.47243 * 64.99777 * 11 9 6 13 13 H 1.08008 * 119.99889 * 0.02562 * 12 11 9 14 14 C 1.37877 * 120.00315 * 180.02562 * 12 11 9 15 15 N 1.31514 * 120.00343 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99546 * 0.02562 * 14 12 11 17 17 H 1.48499 * 109.47539 * 90.00335 * 16 14 12 18 18 H 1.48508 * 109.46741 * 210.00217 * 16 14 12 19 19 H 1.48498 * 109.47186 * 329.99920 * 16 14 12 20 20 C 1.52997 * 109.46978 * 59.99726 * 9 6 5 21 21 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 22 22 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 23 23 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47153 * 300.00319 * 4 2 1 25 25 H 1.08998 * 109.47533 * 59.99948 * 4 2 1 26 26 H 1.09002 * 109.47103 * 300.00247 * 5 4 2 27 27 H 1.08996 * 109.47747 * 179.97438 * 5 4 2 28 28 H 0.96698 * 113.99903 * 300.00057 * 8 6 5 29 29 H 1.08995 * 109.47075 * 185.00067 * 11 9 6 30 30 H 1.09007 * 109.46669 * 304.99824 * 11 9 6 31 31 H 0.96992 * 119.99891 * 179.97438 * 15 14 12 32 32 H 1.09000 * 109.47140 * 180.02562 * 20 9 6 33 33 H 1.09002 * 109.47497 * 60.00450 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5699 -0.7219 -1.2490 6 6 4.0794 -1.4435 0.0003 7 1 3.7157 -2.4711 0.0001 8 8 5.5085 -1.4436 0.0008 9 6 3.5695 -0.7223 1.2495 10 1 3.9333 0.3053 1.2498 11 6 4.0795 -1.4435 2.4988 12 6 5.5814 -1.3372 2.5623 13 1 6.1184 -0.8078 1.7891 14 6 6.2699 -1.9158 3.6073 15 7 7.5807 -1.8235 3.6625 16 14 5.3410 -2.8320 4.9442 17 1 5.2104 -4.2618 4.5653 18 1 6.0844 -2.7253 6.2254 19 1 3.9899 -2.2370 5.1049 20 6 2.0395 -0.7216 1.2492 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.6766 -1.7489 -1.2492 25 1 1.6767 -0.2075 -2.1392 26 1 3.9336 0.3056 -1.2488 27 1 3.9333 -1.2361 -2.1387 28 1 5.9020 -1.8851 -0.7642 29 1 3.6449 -0.9839 3.3865 30 1 3.7910 -2.4938 2.4552 31 1 8.0649 -2.2302 4.3979 32 1 1.6762 -0.2074 2.1390 33 1 1.6757 -1.7492 1.2491 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259524414.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:17 Heat of formation + Delta-G solvation = -103.227296 kcal Electronic energy + Delta-G solvation = -13325.370103 eV Core-core repulsion = 11155.825773 eV Total energy + Delta-G solvation = -2169.544329 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.24735 -36.72645 -35.23913 -33.33912 -31.92661 -29.17704 -26.49655 -24.47181 -22.94550 -21.02760 -20.72826 -18.81804 -17.81344 -16.40266 -16.00224 -15.70935 -15.10582 -14.82041 -14.47063 -13.86735 -13.80188 -13.51692 -13.23807 -12.94182 -12.61390 -12.51144 -12.27990 -12.10466 -11.76311 -11.57365 -11.36018 -11.12897 -10.94353 -10.74495 -10.64090 -10.27164 -8.11527 -6.09058 1.34467 1.36387 1.47506 2.43639 3.19527 3.55140 3.84575 3.87949 4.11463 4.27310 4.33502 4.49970 4.57243 4.63449 4.73520 4.87316 4.98874 5.03126 5.06020 5.12979 5.17847 5.23430 5.30244 5.43605 5.45436 5.50424 5.57253 5.73989 5.80904 6.57258 7.04970 7.27372 7.50190 9.05082 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045536 B = 0.010735 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.753299 B = 2607.749640 C = 3068.957268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.063 0.937 4 C -0.104 4.104 5 C -0.144 4.144 6 C 0.113 3.887 7 H 0.041 0.959 8 O -0.558 6.558 9 C -0.068 4.068 10 H 0.045 0.955 11 C -0.008 4.008 12 C -0.488 4.488 13 H 0.062 0.938 14 C -0.009 4.009 15 N -0.960 5.960 16 Si 0.938 3.062 17 H -0.273 1.273 18 H -0.288 1.288 19 H -0.251 1.251 20 C -0.104 4.104 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.363 0.637 29 H 0.011 0.989 30 H 0.009 0.991 31 H 0.258 0.742 32 H 0.062 0.938 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.896 1.049 -9.624 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.081 0.919 4 C -0.142 4.142 5 C -0.182 4.182 6 C 0.055 3.945 7 H 0.059 0.941 8 O -0.364 6.364 9 C -0.087 4.087 10 H 0.064 0.936 11 C -0.045 4.045 12 C -0.526 4.526 13 H 0.080 0.920 14 C -0.203 4.203 15 N -0.604 5.604 16 Si 0.763 3.237 17 H -0.198 1.198 18 H -0.215 1.215 19 H -0.175 1.175 20 C -0.141 4.141 21 H 0.074 0.926 22 H 0.085 0.915 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.100 0.900 26 H 0.074 0.926 27 H 0.094 0.906 28 H 0.210 0.790 29 H 0.029 0.971 30 H 0.027 0.973 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.877 1.329 -8.961 17.418 hybrid contribution 0.575 -0.750 0.397 1.025 sum -14.302 0.580 -8.564 16.680 Atomic orbital electron populations 1.21775 0.93558 1.02231 1.02184 1.21171 0.96602 0.99172 0.94225 0.91859 1.21517 0.93502 1.01214 0.97934 1.22244 0.97453 1.00969 0.97487 1.21748 0.81004 0.97162 0.94631 0.94078 1.87139 1.19887 1.81134 1.48194 1.21018 0.95069 0.98414 0.94211 0.93646 1.19597 0.95000 0.95239 0.94644 1.21723 0.91943 1.31933 1.07004 0.91959 1.25956 0.95549 0.98031 1.00731 1.70086 1.08292 1.48529 1.33504 0.85844 0.79724 0.79419 0.78742 1.19812 1.21464 1.17463 1.21639 0.92902 1.01042 0.98548 0.92634 0.91455 0.92284 0.91379 0.90041 0.92552 0.90572 0.78986 0.97093 0.97309 0.93328 0.91896 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.58 9.19 71.98 0.66 -1.92 16 2 C -0.09 -2.23 2.72 -10.79 -0.03 -2.26 16 3 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.10 -2.30 5.20 30.59 0.16 -2.14 16 5 C -0.14 -3.93 5.55 30.59 0.17 -3.76 16 6 C 0.11 4.15 2.90 30.60 0.09 4.24 16 7 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 8 O -0.56 -24.50 9.83 -148.98 -1.47 -25.97 16 9 C -0.07 -2.76 2.04 -10.79 -0.02 -2.78 16 10 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 11 C -0.01 -0.37 3.52 29.85 0.10 -0.27 16 12 C -0.49 -29.40 8.38 25.60 0.21 -29.19 16 13 H 0.06 4.16 5.97 -2.91 -0.02 4.14 16 14 C -0.01 -0.55 5.47 84.65 0.46 -0.09 16 15 N -0.96 -63.53 13.96 21.45 0.30 -63.23 16 16 Si 0.94 46.91 27.47 68.60 1.88 48.80 16 17 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 19 H -0.25 -11.69 6.54 99.48 0.65 -11.04 16 20 C -0.10 -3.16 4.48 30.59 0.14 -3.03 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.36 12.37 9.08 -74.06 -0.67 11.70 16 29 H 0.01 0.53 7.20 -2.39 -0.02 0.52 16 30 H 0.01 0.42 7.57 -2.38 -0.02 0.40 16 31 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 32 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -71.60 257.30 3.00 -68.60 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.34 Total: 12.98 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 1.95 Total: -41.19 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: 0.30 Total: -63.23 kcal Atomic # 8 Polarization: -24.50 SS G_CDS: -1.47 Total: -25.97 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.88 Total: 48.80 kcal Total: -71.60 3.00 -68.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524414.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.625 kcal (2) G-P(sol) polarization free energy of solvation -71.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds