Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 8 8 O 1.42897 * 109.46885 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 10 10 H 1.09000 * 109.46870 * 60.00217 * 9 6 5 11 11 C 1.53000 * 109.47328 * 179.97438 * 9 6 5 12 12 C 1.50705 * 109.47020 * 295.00574 * 11 9 6 13 13 H 1.08003 * 120.00165 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99815 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99756 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00103 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46847 * 90.00044 * 16 14 12 18 18 H 1.48500 * 109.46780 * 209.99884 * 16 14 12 19 19 H 1.48493 * 109.46996 * 329.99751 * 16 14 12 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 27 27 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 28 28 H 0.96708 * 114.00092 * 60.00026 * 8 6 5 29 29 H 1.08998 * 109.46990 * 54.99709 * 11 9 6 30 30 H 1.08991 * 109.47625 * 175.00207 * 11 9 6 31 31 H 0.97001 * 119.99810 * 179.97438 * 15 14 12 32 32 H 1.08996 * 109.47747 * 179.97438 * 20 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 1 3.1301 -2.8849 -0.0002 8 8 1.5633 -4.2321 0.0000 9 6 1.5301 -2.1638 1.2491 10 1 0.4401 -2.1638 1.2491 11 6 2.0396 -2.8854 2.4983 12 6 1.4382 -4.2658 2.5614 13 1 0.7601 -4.5953 1.7880 14 6 1.7537 -5.1081 3.6064 15 7 1.2285 -6.3126 3.6616 16 14 2.9271 -4.5385 4.9436 17 1 2.1574 -3.8828 6.0311 18 1 3.6589 -5.7088 5.4913 19 1 3.8977 -3.5713 4.3714 20 6 2.0400 -0.7212 1.2491 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -0.2073 -2.1392 25 1 3.1300 -0.7208 -1.2496 26 1 1.8937 -2.6776 -2.1391 27 1 0.4400 -2.1637 -1.2493 28 1 1.8483 -4.7503 -0.7651 29 1 3.1258 -2.9641 2.4548 30 1 1.7513 -2.3226 3.3861 31 1 1.4508 -6.9053 4.3966 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259524417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = -76.258367 kcal Electronic energy + Delta-G solvation = -13488.721630 eV Core-core repulsion = 11320.346761 eV Total energy + Delta-G solvation = -2168.374869 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.13008 -35.25925 -33.22352 -31.32870 -30.18914 -27.25295 -26.02909 -22.62334 -21.80602 -19.88414 -18.38120 -16.73099 -16.05227 -15.06118 -14.48319 -13.94604 -13.77602 -13.65468 -12.69490 -12.54213 -12.28039 -11.95787 -11.48982 -11.35207 -11.17681 -11.03962 -10.68517 -10.61241 -10.31191 -10.07568 -9.64061 -9.53514 -9.14943 -8.93670 -8.60918 -8.29179 -5.78511 -3.70822 3.41383 3.48753 3.52231 4.62620 4.86029 5.00531 5.07271 5.37556 5.48678 5.54849 5.62417 5.65168 5.82416 5.91260 5.94600 6.00011 6.10665 6.21640 6.29432 6.32886 6.47939 6.53677 6.67260 6.70188 6.94471 7.02975 7.35510 7.56694 8.01893 8.60190 8.87035 9.48305 9.84893 11.35195 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047397 B = 0.011051 C = 0.009930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.618382 B = 2533.197910 C = 2818.995375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 H 0.062 0.938 4 C -0.109 4.109 5 C -0.156 4.156 6 C 0.119 3.881 7 H 0.039 0.961 8 O -0.519 6.519 9 C -0.068 4.068 10 H 0.072 0.928 11 C -0.009 4.009 12 C -0.486 4.486 13 H 0.099 0.901 14 C 0.058 3.942 15 N -0.911 5.911 16 Si 0.868 3.132 17 H -0.281 1.281 18 H -0.291 1.291 19 H -0.270 1.270 20 C -0.112 4.112 21 H 0.051 0.949 22 H 0.067 0.933 23 H 0.046 0.954 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.070 0.930 28 H 0.346 0.654 29 H 0.010 0.990 30 H 0.008 0.992 31 H 0.257 0.743 32 H 0.056 0.944 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.816 11.342 -8.964 14.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.194 4.194 6 C 0.060 3.940 7 H 0.057 0.943 8 O -0.321 6.321 9 C -0.087 4.087 10 H 0.090 0.910 11 C -0.047 4.047 12 C -0.524 4.524 13 H 0.116 0.884 14 C -0.140 4.140 15 N -0.553 5.553 16 Si 0.696 3.304 17 H -0.207 1.207 18 H -0.218 1.218 19 H -0.194 1.194 20 C -0.149 4.149 21 H 0.070 0.930 22 H 0.086 0.914 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.190 0.810 29 H 0.028 0.972 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.542 11.389 -8.285 14.167 hybrid contribution 1.003 0.055 0.275 1.042 sum 2.545 11.444 -8.010 14.198 Atomic orbital electron populations 1.21944 0.95457 1.02653 1.00748 1.21123 0.96019 0.98503 0.95457 0.91984 1.21481 1.00225 0.95622 0.97325 1.22416 1.02022 0.95991 0.98928 1.21608 0.95957 0.83030 0.93410 0.94302 1.87215 1.76457 1.21962 1.46515 1.21073 1.00721 0.91649 0.95240 0.90987 1.19640 0.96064 0.96843 0.92116 1.21432 1.26862 0.95832 1.08229 0.88357 1.25032 0.96149 0.95080 0.97784 1.69919 1.45414 1.07628 1.32292 0.86970 0.82230 0.78147 0.83014 1.20725 1.21773 1.19450 1.21678 1.00223 0.96298 0.96728 0.92953 0.91420 0.93521 0.92581 0.92331 0.92762 0.91179 0.80962 0.97180 0.97408 0.93338 0.92489 0.91943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.50 37.16 0.32 -1.67 16 2 C -0.09 -1.24 3.19 -90.62 -0.29 -1.53 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.40 5.45 -26.73 -0.15 -1.55 16 5 C -0.16 -2.28 5.27 -26.73 -0.14 -2.42 16 6 C 0.12 2.22 2.90 -26.73 -0.08 2.14 16 7 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 8 O -0.52 -11.07 9.83 -35.23 -0.35 -11.41 16 9 C -0.07 -1.38 1.76 -90.62 -0.16 -1.54 16 10 H 0.07 1.53 6.43 -51.93 -0.33 1.19 16 11 C -0.01 -0.23 3.52 -27.88 -0.10 -0.33 16 12 C -0.49 -14.23 8.38 -34.44 -0.29 -14.52 16 13 H 0.10 3.12 5.97 -52.48 -0.31 2.80 16 14 C 0.06 1.76 5.47 -17.82 -0.10 1.66 16 15 N -0.91 -29.22 13.96 55.43 0.77 -28.45 16 16 Si 0.87 22.63 27.47 -169.99 -4.67 17.96 16 17 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 18 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 19 H -0.27 -6.78 6.54 56.52 0.37 -6.41 16 20 C -0.11 -1.81 4.73 -26.73 -0.13 -1.94 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.00 4.81 -51.93 -0.25 0.75 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.06 6.43 -51.93 -0.33 0.73 16 28 H 0.35 5.75 9.08 45.56 0.41 6.16 16 29 H 0.01 0.25 7.20 -51.93 -0.37 -0.12 16 30 H 0.01 0.19 7.57 -51.93 -0.39 -0.20 16 31 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 250.26 15.07 3.77 3.77 Total: -1.00 -32.50 250.26 -6.13 -38.63 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.56 Total: 1.18 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.11 Total: -21.69 kcal Atomic # 7 Polarization: -29.22 SS G_CDS: 0.77 Total: -28.45 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: -0.35 Total: -11.41 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.67 Total: 17.96 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.50 -6.13 -38.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.626 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds