Wall clock time and date at job start Mon Mar 30 2020 02:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.53002 * 109.46977 * 299.99541 * 4 2 1 6 6 C 1.53000 * 109.47233 * 300.00464 * 5 4 2 7 7 H 1.09000 * 109.46968 * 299.99808 * 6 5 4 8 8 O 1.42897 * 109.46885 * 179.97438 * 6 5 4 9 9 C 1.52996 * 109.47328 * 59.99531 * 6 5 4 10 10 H 1.09000 * 109.46870 * 60.00217 * 9 6 5 11 11 C 1.53000 * 109.47328 * 179.97438 * 9 6 5 12 12 C 1.50705 * 109.47020 * 295.00574 * 11 9 6 13 13 H 1.08003 * 120.00165 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99815 * 179.97438 * 12 11 9 15 15 N 1.31514 * 119.99756 * 179.97438 * 14 12 11 16 16 Si 1.86806 * 120.00103 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46847 * 90.00044 * 16 14 12 18 18 H 1.48500 * 109.46780 * 209.99884 * 16 14 12 19 19 H 1.48493 * 109.46996 * 329.99751 * 16 14 12 20 20 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 25 25 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 26 26 H 1.08992 * 109.47063 * 180.02562 * 5 4 2 27 27 H 1.09004 * 109.46733 * 59.99806 * 5 4 2 28 28 H 0.96708 * 114.00092 * 60.00026 * 8 6 5 29 29 H 1.08998 * 109.46990 * 54.99709 * 11 9 6 30 30 H 1.08991 * 109.47625 * 175.00207 * 11 9 6 31 31 H 0.97001 * 119.99810 * 179.97438 * 15 14 12 32 32 H 1.08996 * 109.47747 * 179.97438 * 20 2 1 33 33 H 1.09002 * 109.47103 * 300.00247 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.5301 -2.1637 -1.2494 6 6 2.0401 -2.8850 -0.0001 7 1 3.1301 -2.8849 -0.0002 8 8 1.5633 -4.2321 0.0000 9 6 1.5301 -2.1638 1.2491 10 1 0.4401 -2.1638 1.2491 11 6 2.0396 -2.8854 2.4983 12 6 1.4382 -4.2658 2.5614 13 1 0.7601 -4.5953 1.7880 14 6 1.7537 -5.1081 3.6064 15 7 1.2285 -6.3126 3.6616 16 14 2.9271 -4.5385 4.9436 17 1 2.1574 -3.8828 6.0311 18 1 3.6589 -5.7088 5.4913 19 1 3.8977 -3.5713 4.3714 20 6 2.0400 -0.7212 1.2491 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.6767 -0.2073 -2.1392 25 1 3.1300 -0.7208 -1.2496 26 1 1.8937 -2.6776 -2.1391 27 1 0.4400 -2.1637 -1.2493 28 1 1.8483 -4.7503 -0.7651 29 1 3.1258 -2.9641 2.4548 30 1 1.7513 -2.3226 3.3861 31 1 1.4508 -6.9053 4.3966 32 1 3.1300 -0.7217 1.2489 33 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259524417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:19 Heat of formation + Delta-G solvation = -98.903629 kcal Electronic energy + Delta-G solvation = -13489.703602 eV Core-core repulsion = 11320.346761 eV Total energy + Delta-G solvation = -2169.356841 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.46865 -36.71274 -35.22161 -33.25369 -31.40912 -29.06810 -27.20196 -24.44340 -23.15196 -21.52696 -19.69738 -18.66976 -17.80416 -16.51309 -16.08685 -15.68634 -15.02682 -14.97446 -14.52139 -14.00133 -13.79428 -13.58349 -13.16725 -12.82431 -12.59423 -12.49791 -12.31521 -12.01299 -11.79824 -11.55904 -11.26677 -11.11607 -10.84496 -10.70892 -10.61760 -10.24800 -8.10985 -6.08228 1.34566 1.36228 1.47292 2.43892 3.20199 3.55747 3.86813 3.90966 4.18248 4.31577 4.34263 4.46474 4.54493 4.64571 4.73297 4.87747 5.00586 5.06536 5.10279 5.14465 5.17859 5.21595 5.29565 5.43153 5.50010 5.54286 5.58541 5.78868 5.81895 6.58073 7.05823 7.28012 7.50977 9.05579 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047397 B = 0.011051 C = 0.009930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.618382 B = 2533.197910 C = 2818.995375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.106 4.106 5 C -0.146 4.146 6 C 0.114 3.886 7 H 0.038 0.962 8 O -0.558 6.558 9 C -0.068 4.068 10 H 0.052 0.948 11 C -0.009 4.009 12 C -0.486 4.486 13 H 0.063 0.937 14 C -0.009 4.009 15 N -0.960 5.960 16 Si 0.937 3.063 17 H -0.272 1.272 18 H -0.289 1.289 19 H -0.252 1.252 20 C -0.107 4.107 21 H 0.052 0.948 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.363 0.637 29 H 0.009 0.991 30 H 0.009 0.991 31 H 0.258 0.742 32 H 0.063 0.937 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.048 13.847 -9.682 17.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.107 0.893 4 C -0.143 4.143 5 C -0.183 4.183 6 C 0.055 3.945 7 H 0.056 0.944 8 O -0.363 6.363 9 C -0.087 4.087 10 H 0.071 0.929 11 C -0.047 4.047 12 C -0.524 4.524 13 H 0.081 0.919 14 C -0.202 4.202 15 N -0.604 5.604 16 Si 0.762 3.238 17 H -0.197 1.197 18 H -0.215 1.215 19 H -0.176 1.176 20 C -0.145 4.145 21 H 0.071 0.929 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.100 0.900 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.209 0.791 29 H 0.027 0.973 30 H 0.027 0.973 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.779 13.916 -9.022 16.816 hybrid contribution 0.554 -0.772 0.439 1.047 sum 3.333 13.144 -8.583 16.048 Atomic orbital electron populations 1.21933 0.95524 1.01421 1.01915 1.21133 0.95926 0.99537 0.94085 0.89269 1.21506 1.00794 0.93992 0.98041 1.22280 1.01458 0.97272 0.97310 1.21737 0.95850 0.82152 0.94763 0.94367 1.87138 1.77118 1.23917 1.48172 1.21028 0.99576 0.94124 0.93927 0.92919 1.19619 0.95575 0.94785 0.94677 1.21721 1.25790 0.97958 1.06967 0.91910 1.25947 0.98388 0.95176 1.00735 1.70089 1.47591 1.09202 1.33515 0.85853 0.80125 0.77993 0.79804 1.19726 1.21536 1.17633 1.21638 1.00554 0.93615 0.98696 0.92874 0.93828 0.91346 0.89994 0.91420 0.90878 0.92016 0.79050 0.97309 0.97302 0.93364 0.91821 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 8.50 71.98 0.61 -2.98 16 2 C -0.09 -2.06 3.19 -10.79 -0.03 -2.10 16 3 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 4 C -0.11 -2.30 5.45 30.60 0.17 -2.14 16 5 C -0.15 -3.95 5.27 30.60 0.16 -3.79 16 6 C 0.11 4.16 2.90 30.59 0.09 4.25 16 7 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 8 O -0.56 -24.45 9.83 -148.98 -1.47 -25.92 16 9 C -0.07 -2.71 1.76 -10.79 -0.02 -2.73 16 10 H 0.05 2.28 6.43 -2.39 -0.02 2.26 16 11 C -0.01 -0.46 3.52 29.85 0.11 -0.35 16 12 C -0.49 -29.23 8.38 25.60 0.21 -29.01 16 13 H 0.06 4.17 5.97 -2.91 -0.02 4.16 16 14 C -0.01 -0.54 5.47 84.65 0.46 -0.08 16 15 N -0.96 -63.45 13.96 21.45 0.30 -63.15 16 16 Si 0.94 46.96 27.47 68.60 1.88 48.85 16 17 H -0.27 -13.13 7.11 99.48 0.71 -12.42 16 18 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 19 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 20 C -0.11 -3.24 4.73 30.59 0.14 -3.10 16 21 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 22 H 0.04 1.25 4.81 -2.39 -0.01 1.23 16 23 H 0.07 1.32 8.14 -2.38 -0.02 1.31 16 24 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 1.79 6.43 -2.39 -0.02 1.78 16 28 H 0.36 12.37 9.08 -74.05 -0.67 11.70 16 29 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 30 H 0.01 0.42 7.57 -2.39 -0.02 0.41 16 31 H 0.26 16.01 8.31 -92.71 -0.77 15.24 16 32 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -71.49 250.26 2.97 -68.52 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.35 Total: 13.72 kcal Atomic # 6 Polarization: -43.93 SS G_CDS: 1.90 Total: -42.03 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: 0.30 Total: -63.15 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -1.47 Total: -25.92 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.85 kcal Total: -71.49 2.97 -68.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259524417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.382 kcal (2) G-P(sol) polarization free energy of solvation -71.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds