Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46925 * 2 1 4 4 C 1.53007 * 109.46947 * 239.99945 * 2 1 3 5 5 C 1.52998 * 109.47185 * 300.00025 * 4 2 1 6 6 C 1.53001 * 109.47168 * 300.00321 * 5 4 2 7 7 C 1.52998 * 109.47440 * 59.99596 * 6 5 4 8 8 H 1.09000 * 109.46819 * 60.00333 * 7 6 5 9 9 C 1.53001 * 109.47103 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.47168 * 295.00282 * 9 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.52998 * 109.47270 * 300.00342 * 7 6 5 19 19 H 1.08999 * 109.47050 * 179.97438 * 18 7 6 20 20 O 1.42901 * 109.47218 * 299.99945 * 18 7 6 21 21 H 1.09005 * 109.47534 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47159 * 299.99627 * 1 2 3 23 23 H 1.08995 * 109.47231 * 59.99977 * 1 2 3 24 24 H 1.09000 * 109.47014 * 179.97438 * 4 2 1 25 25 H 1.08995 * 109.47091 * 59.99992 * 4 2 1 26 26 H 1.08990 * 109.47168 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47193 * 60.00050 * 5 4 2 28 28 H 1.09007 * 109.46696 * 299.99629 * 6 5 4 29 29 H 1.08997 * 109.47274 * 180.02562 * 6 5 4 30 30 H 1.09007 * 109.46922 * 174.99984 * 9 7 6 31 31 H 1.09003 * 109.46836 * 55.00740 * 9 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 0.96704 * 113.99952 * 180.02562 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 6 2.0405 -2.8847 2.4985 10 6 1.4401 -4.2654 2.5622 11 1 0.7625 -4.5959 1.7889 12 6 1.7559 -5.1068 3.6079 13 7 2.5814 -4.7046 4.5494 14 14 1.0111 -6.8181 3.6874 15 1 1.5067 -7.5178 4.8998 16 1 -0.4689 -6.7115 3.7469 17 1 1.4038 -7.5855 2.4782 18 6 2.0400 -0.7213 1.2492 19 1 1.6764 -0.2073 2.1390 20 8 3.4690 -0.7213 1.2492 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.1300 -0.7209 -1.2495 25 1 1.6766 -0.2075 -2.1392 26 1 1.8936 -2.6777 -2.1390 27 1 0.4400 -2.1638 -1.2493 28 1 3.1300 -2.8851 -0.0001 29 1 1.6770 -3.9128 -0.0002 30 1 1.7522 -2.3217 3.3862 31 1 3.1269 -2.9625 2.4546 32 1 2.8032 -5.2964 5.2852 33 1 3.8624 0.1622 1.2495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259542688.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -85.587504 kcal Electronic energy + Delta-G solvation = -13423.564587 eV Core-core repulsion = 11254.785176 eV Total energy + Delta-G solvation = -2168.779410 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.21269 -34.72824 -33.53909 -31.55439 -30.35521 -26.48931 -25.89105 -22.97357 -21.76905 -20.00167 -18.38738 -16.35562 -16.12986 -15.26729 -14.34339 -14.14259 -13.87027 -13.02010 -12.83598 -12.38672 -12.09803 -12.01481 -11.52561 -11.25860 -11.01819 -10.92567 -10.76681 -10.61456 -10.28096 -10.04219 -9.62987 -9.59850 -9.24221 -8.81723 -8.70501 -8.23522 -5.89356 -3.90621 3.38208 3.42500 3.44815 4.53170 4.84954 5.07381 5.09635 5.31747 5.45834 5.66203 5.72598 5.84749 5.86313 5.98752 6.06094 6.17657 6.20641 6.24558 6.38775 6.41223 6.63675 6.72806 6.82849 7.11656 7.25984 7.33307 7.80440 8.00921 8.16907 8.24855 8.54898 9.16748 9.71776 11.21914 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049651 B = 0.009772 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.803852 B = 2864.628334 C = 3056.399223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 H 0.059 0.941 4 C -0.106 4.106 5 C -0.123 4.123 6 C -0.100 4.100 7 C -0.072 4.072 8 H 0.067 0.933 9 C 0.031 3.969 10 C -0.515 4.515 11 H 0.054 0.946 12 C 0.055 3.945 13 N -0.896 5.896 14 Si 0.888 3.112 15 H -0.288 1.288 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.113 3.887 19 H 0.045 0.955 20 O -0.551 6.551 21 H 0.068 0.932 22 H 0.051 0.949 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.010 0.990 31 H 0.025 0.975 32 H 0.259 0.741 33 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.149 8.792 -9.254 12.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 H 0.077 0.923 4 C -0.143 4.143 5 C -0.160 4.160 6 C -0.138 4.138 7 C -0.090 4.090 8 H 0.085 0.915 9 C -0.006 4.006 10 C -0.553 4.553 11 H 0.072 0.928 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.716 3.284 15 H -0.214 1.214 16 H -0.204 1.204 17 H -0.203 1.203 18 C 0.054 3.946 19 H 0.063 0.937 20 O -0.354 6.354 21 H 0.087 0.913 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.028 0.972 31 H 0.043 0.957 32 H 0.069 0.931 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -2.164 8.070 -9.086 12.344 hybrid contribution -0.340 -0.286 0.157 0.471 sum -2.503 7.785 -8.929 12.108 Atomic orbital electron populations 1.21885 0.95078 1.02722 1.00865 1.21827 0.96452 0.98604 0.97310 0.92255 1.21433 1.00845 0.96038 0.95985 1.21644 1.00259 0.95315 0.98777 1.21410 1.00918 0.99038 0.92388 1.21261 0.98681 0.90974 0.98128 0.91507 1.19056 0.97151 0.93980 0.90373 1.21257 1.26992 0.99318 1.07747 0.92804 1.25017 0.95356 0.98240 0.95900 1.69973 1.35078 1.36395 1.12068 0.86728 0.79474 0.84888 0.77299 1.21402 1.20376 1.20333 1.21984 0.80469 0.98162 0.93979 0.93717 1.86681 1.19796 1.31751 1.97200 0.91322 0.92990 0.93260 0.91763 0.93317 0.93098 0.92492 0.92040 0.91572 0.97205 0.95651 0.93139 0.79610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 8.50 37.16 0.32 -1.66 16 2 C -0.12 -1.76 2.91 -90.62 -0.26 -2.02 16 3 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.50 5.31 -26.73 -0.14 -1.64 16 5 C -0.12 -1.93 5.65 -26.73 -0.15 -2.08 16 6 C -0.10 -1.99 4.87 -26.73 -0.13 -2.12 16 7 C -0.07 -1.52 1.70 -90.62 -0.15 -1.68 16 8 H 0.07 1.39 6.43 -51.93 -0.33 1.06 16 9 C 0.03 0.84 4.23 -27.89 -0.12 0.72 16 10 C -0.51 -14.80 8.41 -34.44 -0.29 -15.09 16 11 H 0.05 1.49 7.06 -52.49 -0.37 1.12 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.70 13.29 55.43 0.74 -26.96 16 14 Si 0.89 22.13 29.54 -169.99 -5.02 17.11 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 C 0.11 2.00 2.73 -26.73 -0.07 1.93 16 19 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 20 O -0.55 -9.94 11.39 -35.23 -0.40 -10.35 16 21 H 0.07 1.00 4.81 -51.93 -0.25 0.75 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.86 6.43 -51.93 -0.33 0.53 16 28 H 0.06 1.31 7.68 -51.92 -0.40 0.91 16 29 H 0.07 1.41 6.95 -51.93 -0.36 1.05 16 30 H 0.01 0.28 8.14 -51.92 -0.42 -0.15 16 31 H 0.03 0.75 7.83 -51.93 -0.41 0.34 16 32 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 33 H 0.36 4.65 9.08 45.56 0.41 5.06 16 LS Contribution 254.54 15.07 3.84 3.84 Total: -1.00 -31.43 254.54 -6.49 -37.92 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.53 Total: 0.55 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -1.10 Total: -22.10 kcal Atomic # 7 Polarization: -27.70 SS G_CDS: 0.74 Total: -26.96 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.40 Total: -10.35 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -31.43 -6.49 -37.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542688.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.667 kcal (2) G-P(sol) polarization free energy of solvation -31.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds