Wall clock time and date at job start Mon Mar 30 2020 02:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.46925 * 2 1 4 4 C 1.53007 * 109.46947 * 239.99945 * 2 1 3 5 5 C 1.52998 * 109.47185 * 300.00025 * 4 2 1 6 6 C 1.53001 * 109.47168 * 300.00321 * 5 4 2 7 7 C 1.52998 * 109.47440 * 59.99596 * 6 5 4 8 8 H 1.09000 * 109.46819 * 60.00333 * 7 6 5 9 9 C 1.53001 * 109.47103 * 180.02562 * 7 6 5 10 10 C 1.50694 * 109.47168 * 295.00282 * 9 7 6 11 11 H 1.08000 * 120.00563 * 0.02562 * 10 9 7 12 12 C 1.37885 * 119.99902 * 180.02562 * 10 9 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46985 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47276 * 299.99832 * 14 12 10 17 17 H 1.48498 * 109.47150 * 60.00043 * 14 12 10 18 18 C 1.52998 * 109.47270 * 300.00342 * 7 6 5 19 19 H 1.08999 * 109.47050 * 179.97438 * 18 7 6 20 20 O 1.42901 * 109.47218 * 299.99945 * 18 7 6 21 21 H 1.09005 * 109.47534 * 180.02562 * 1 2 3 22 22 H 1.09002 * 109.47159 * 299.99627 * 1 2 3 23 23 H 1.08995 * 109.47231 * 59.99977 * 1 2 3 24 24 H 1.09000 * 109.47014 * 179.97438 * 4 2 1 25 25 H 1.08995 * 109.47091 * 59.99992 * 4 2 1 26 26 H 1.08990 * 109.47168 * 180.02562 * 5 4 2 27 27 H 1.09000 * 109.47193 * 60.00050 * 5 4 2 28 28 H 1.09007 * 109.46696 * 299.99629 * 6 5 4 29 29 H 1.08997 * 109.47274 * 180.02562 * 6 5 4 30 30 H 1.09007 * 109.46922 * 174.99984 * 9 7 6 31 31 H 1.09003 * 109.46836 * 55.00740 * 9 7 6 32 32 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 33 33 H 0.96704 * 113.99952 * 180.02562 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5300 -2.1638 -1.2493 6 6 2.0399 -2.8850 0.0000 7 6 1.5300 -2.1638 1.2492 8 1 0.4400 -2.1638 1.2492 9 6 2.0405 -2.8847 2.4985 10 6 1.4401 -4.2654 2.5622 11 1 0.7625 -4.5959 1.7889 12 6 1.7559 -5.1068 3.6079 13 7 2.5814 -4.7046 4.5494 14 14 1.0111 -6.8181 3.6874 15 1 1.5067 -7.5178 4.8998 16 1 -0.4689 -6.7115 3.7469 17 1 1.4038 -7.5855 2.4782 18 6 2.0400 -0.7213 1.2492 19 1 1.6764 -0.2073 2.1390 20 8 3.4690 -0.7213 1.2492 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 3.1300 -0.7209 -1.2495 25 1 1.6766 -0.2075 -2.1392 26 1 1.8936 -2.6777 -2.1390 27 1 0.4400 -2.1638 -1.2493 28 1 3.1300 -2.8851 -0.0001 29 1 1.6770 -3.9128 -0.0002 30 1 1.7522 -2.3217 3.3862 31 1 3.1269 -2.9625 2.4546 32 1 2.8032 -5.2964 5.2852 33 1 3.8624 0.1622 1.2495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259542688.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:30 Heat of formation + Delta-G solvation = -107.013510 kcal Electronic energy + Delta-G solvation = -13424.493688 eV Core-core repulsion = 11254.785176 eV Total energy + Delta-G solvation = -2169.708512 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.60980 -36.14492 -35.51106 -33.36008 -31.79674 -28.45338 -27.08789 -24.92197 -23.13766 -21.64984 -19.82700 -18.39816 -17.66522 -16.80539 -16.19372 -15.46686 -15.30179 -14.65727 -14.32418 -14.03516 -13.69183 -13.52554 -13.15525 -12.77902 -12.71939 -12.52333 -12.40245 -12.15199 -11.81271 -11.62244 -11.38804 -11.29549 -10.91667 -10.57298 -10.47580 -10.27876 -8.16360 -6.26752 1.38036 1.41885 1.49439 2.41657 3.15770 3.55875 3.86022 3.87770 4.07306 4.34625 4.45419 4.54846 4.60918 4.67539 4.74934 4.89371 4.95133 5.05463 5.14910 5.16195 5.27484 5.40073 5.42742 5.51088 5.55840 5.59348 5.66445 5.86818 5.96277 6.29880 6.89293 7.09576 7.41215 8.95540 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.049651 B = 0.009772 C = 0.009159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.803852 B = 2864.628334 C = 3056.399223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 H 0.087 0.913 4 C -0.103 4.103 5 C -0.116 4.116 6 C -0.095 4.095 7 C -0.069 4.069 8 H 0.070 0.930 9 C 0.040 3.960 10 C -0.532 4.532 11 H 0.061 0.939 12 C -0.005 4.005 13 N -0.936 5.936 14 Si 0.963 3.037 15 H -0.284 1.284 16 H -0.265 1.265 17 H -0.268 1.268 18 C 0.113 3.887 19 H 0.038 0.962 20 O -0.575 6.575 21 H 0.052 0.948 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.038 0.962 29 H 0.042 0.958 30 H -0.022 1.022 31 H -0.015 1.015 32 H 0.261 0.739 33 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.359 9.343 -11.094 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.132 4.132 3 H 0.106 0.894 4 C -0.140 4.140 5 C -0.154 4.154 6 C -0.133 4.133 7 C -0.087 4.087 8 H 0.088 0.912 9 C 0.003 3.997 10 C -0.570 4.570 11 H 0.079 0.921 12 C -0.202 4.202 13 N -0.577 5.577 14 Si 0.787 3.213 15 H -0.209 1.209 16 H -0.189 1.189 17 H -0.193 1.193 18 C 0.055 3.945 19 H 0.056 0.944 20 O -0.382 6.382 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.057 0.943 29 H 0.061 0.939 30 H -0.004 1.004 31 H 0.004 0.996 32 H 0.070 0.930 33 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -3.376 8.644 -10.943 14.348 hybrid contribution 0.092 -0.433 0.774 0.891 sum -3.283 8.211 -10.169 13.476 Atomic orbital electron populations 1.21890 0.94152 1.02163 1.02354 1.21758 0.97110 0.99421 0.94955 0.89449 1.21437 1.00513 0.94903 0.97147 1.21594 1.00885 0.96220 0.96658 1.21297 0.99409 0.98344 0.94210 1.21124 0.98772 0.93044 0.95770 0.91185 1.18897 0.94599 0.94060 0.92162 1.21670 1.27077 1.00306 1.07972 0.92073 1.26019 0.95738 1.03045 0.95407 1.70129 1.36560 1.38196 1.12823 0.85538 0.79067 0.79064 0.77612 1.20937 1.18936 1.19270 1.21878 0.80520 0.96013 0.96122 0.94431 1.86625 1.20123 1.34095 1.97351 0.92876 0.92753 0.90604 0.92422 0.90134 0.91583 0.91377 0.94289 0.93875 1.00393 0.99611 0.92999 0.77005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.50 71.98 0.61 -2.86 16 2 C -0.11 -2.90 2.91 -10.79 -0.03 -2.93 16 3 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 4 C -0.10 -2.57 5.31 30.60 0.16 -2.40 16 5 C -0.12 -3.40 5.65 30.59 0.17 -3.23 16 6 C -0.09 -3.80 4.87 30.59 0.15 -3.65 16 7 C -0.07 -2.96 1.70 -10.79 -0.02 -2.98 16 8 H 0.07 2.94 6.43 -2.39 -0.02 2.93 16 9 C 0.04 2.25 4.23 29.85 0.13 2.37 16 10 C -0.53 -31.49 8.41 25.60 0.22 -31.27 16 11 H 0.06 3.44 7.06 -2.91 -0.02 3.42 16 12 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 13 N -0.94 -59.74 13.29 21.45 0.28 -59.46 16 14 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 15 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 16 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 18 C 0.11 3.98 2.73 30.59 0.08 4.06 16 19 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 20 O -0.58 -20.81 11.39 -148.98 -1.70 -22.50 16 21 H 0.05 1.41 4.81 -2.38 -0.01 1.39 16 22 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.06 1.54 7.68 -2.39 -0.02 1.52 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.07 1.87 6.43 -2.39 -0.02 1.85 16 28 H 0.04 1.70 7.68 -2.38 -0.02 1.68 16 29 H 0.04 1.87 6.95 -2.39 -0.02 1.85 16 30 H -0.02 -1.37 8.14 -2.38 -0.02 -1.39 16 31 H -0.01 -0.92 7.83 -2.39 -0.02 -0.94 16 32 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 33 H 0.38 9.52 9.08 -74.05 -0.67 8.84 16 Total: -1.00 -70.05 254.54 2.95 -67.10 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.41 Total: 9.75 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 1.93 Total: -42.74 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: 0.28 Total: -59.46 kcal Atomic # 8 Polarization: -20.81 SS G_CDS: -1.70 Total: -22.50 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -70.05 2.95 -67.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259542688.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.916 kcal (2) G-P(sol) polarization free energy of solvation -70.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds