Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42889 * 1 3 3 C 1.42906 * 114.00077 * 2 1 4 4 H 1.09002 * 109.46842 * 30.00331 * 3 2 1 5 5 C 1.52997 * 109.47321 * 270.00343 * 3 2 1 6 6 C 1.53002 * 109.46817 * 180.02562 * 5 3 2 7 7 H 1.08992 * 109.47063 * 299.99823 * 6 5 3 8 8 C 1.53001 * 109.46637 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47233 * 60.00194 * 6 5 3 10 10 C 1.52997 * 109.47060 * 299.99657 * 9 6 5 11 11 C 1.52999 * 109.47317 * 59.99960 * 10 9 6 12 12 H 1.09002 * 109.46716 * 60.00091 * 11 10 9 13 13 C 1.50703 * 109.47466 * 180.02562 * 11 10 9 14 14 H 1.07996 * 119.99751 * 120.00134 * 13 11 10 15 15 C 1.37880 * 119.99788 * 300.00202 * 13 11 10 16 16 N 1.31510 * 119.99893 * 359.97438 * 15 13 11 17 17 Si 1.86794 * 119.99568 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47470 * 90.00234 * 17 15 13 19 19 H 1.48501 * 109.47000 * 209.99981 * 17 15 13 20 20 H 1.48498 * 109.47335 * 329.99935 * 17 15 13 21 21 H 1.09000 * 109.47013 * 299.99641 * 1 2 3 22 22 H 1.09008 * 109.47391 * 59.99318 * 1 2 3 23 23 H 1.08998 * 109.47481 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47194 * 59.99510 * 5 3 2 25 25 H 1.09002 * 109.46695 * 299.99523 * 5 3 2 26 26 H 1.09002 * 109.47508 * 299.99876 * 8 6 5 27 27 H 1.09000 * 109.47437 * 60.00474 * 8 6 5 28 28 H 1.09001 * 109.47109 * 179.97438 * 8 6 5 29 29 H 1.09002 * 109.47398 * 59.99826 * 9 6 5 30 30 H 1.09001 * 109.47194 * 180.02562 * 9 6 5 31 31 H 1.08996 * 109.47853 * 180.02562 * 10 9 6 32 32 H 1.09002 * 109.47153 * 300.00319 * 10 9 6 33 33 H 0.96996 * 119.99480 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7715 -1.4425 6 6 2.8405 3.1690 -1.4423 7 1 2.1756 3.8630 -0.9283 8 6 3.0484 3.6346 -2.8848 9 6 4.1893 3.1261 -0.7213 10 6 3.9819 2.6601 0.7211 11 6 3.3589 1.2627 0.7211 12 1 4.0238 0.5685 0.2071 13 6 3.1541 0.8039 2.1419 14 1 2.1614 0.5666 2.4949 15 6 4.2340 0.6872 2.9911 16 7 5.4429 0.9757 2.5611 17 14 3.9801 0.1178 4.7520 18 1 4.0873 -1.3620 4.8142 19 1 5.0173 0.7263 5.6234 20 1 2.6339 0.5366 5.2184 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.2568 1.8015 -1.9563 25 1 2.8828 1.0776 -1.9563 26 1 3.7135 2.9404 -3.3985 27 1 2.0877 3.6652 -3.3989 28 1 3.4918 4.6304 -2.8848 29 1 4.8542 2.4319 -1.2354 30 1 4.6328 4.1217 -0.7208 31 1 4.9426 2.6299 1.2350 32 1 3.3170 3.3542 1.2352 33 1 6.2025 0.8939 3.1587 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546575.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = -93.396012 kcal Electronic energy + Delta-G solvation = -13447.267416 eV Core-core repulsion = 11278.149403 eV Total energy + Delta-G solvation = -2169.118013 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.14834 -37.42257 -35.24704 -32.45607 -30.71898 -28.35796 -27.30004 -25.30183 -23.01686 -21.76931 -20.55161 -18.41915 -17.20198 -16.70641 -16.08520 -15.75407 -15.31973 -14.86140 -14.39761 -14.02251 -13.78794 -13.32115 -13.12263 -12.85469 -12.67718 -12.48736 -12.42369 -12.08195 -11.81962 -11.70488 -11.39291 -11.24872 -10.98730 -10.66540 -10.39585 -10.02774 -8.04934 -6.16887 1.39663 1.40693 1.50563 2.44738 3.08618 3.26254 3.95430 4.06760 4.16479 4.35155 4.50215 4.62947 4.64445 4.69297 4.78476 4.86023 4.86990 4.89258 5.02097 5.05205 5.18779 5.29901 5.35919 5.41458 5.54925 5.64255 5.70086 5.93400 6.12507 6.42190 6.66963 6.92038 7.48719 8.99260 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.034969 B = 0.012780 C = 0.009817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.522062 B = 2190.385318 C = 2851.388558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.102 3.898 4 H 0.044 0.956 5 C -0.125 4.125 6 C -0.084 4.084 7 H 0.070 0.930 8 C -0.137 4.137 9 C -0.109 4.109 10 C -0.102 4.102 11 C 0.050 3.950 12 H -0.011 1.011 13 C -0.518 4.518 14 H 0.045 0.955 15 C 0.009 3.991 16 N -0.919 5.919 17 Si 0.951 3.049 18 H -0.280 1.280 19 H -0.281 1.281 20 H -0.269 1.269 21 H 0.033 0.967 22 H 0.052 0.948 23 H 0.092 0.908 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.931 4.247 -7.438 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C 0.045 3.955 4 H 0.062 0.938 5 C -0.162 4.162 6 C -0.103 4.103 7 H 0.088 0.912 8 C -0.194 4.194 9 C -0.146 4.146 10 C -0.141 4.141 11 C 0.032 3.968 12 H 0.008 0.992 13 C -0.556 4.556 14 H 0.063 0.937 15 C -0.189 4.189 16 N -0.559 5.559 17 Si 0.777 3.223 18 H -0.206 1.206 19 H -0.206 1.206 20 H -0.194 1.194 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.111 0.889 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.645 4.088 -7.378 10.738 hybrid contribution 0.031 -0.386 1.191 1.253 sum -6.614 3.702 -6.187 9.784 Atomic orbital electron populations 1.22863 0.81034 1.03055 0.99939 1.87925 1.20270 1.29375 1.95061 1.22236 0.95334 0.82942 0.94999 0.93816 1.22027 1.00855 0.97060 0.96294 1.21064 0.96315 0.95596 0.97299 0.91200 1.21765 1.02096 1.01245 0.94306 1.21624 0.96994 1.00212 0.95776 1.21413 1.01380 0.95923 0.95349 1.18699 0.90860 0.93617 0.93666 0.99237 1.21423 0.93139 1.43735 0.97316 0.93694 1.25705 0.95061 0.95789 1.02300 1.70013 0.98974 1.50122 1.36807 0.85662 0.77928 0.78313 0.80380 1.20581 1.20619 1.19366 0.94827 0.92947 0.88930 0.90895 0.92997 0.93019 0.91503 0.91656 0.93815 0.91687 0.91936 0.94988 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.82 113.37 1.23 2.11 16 2 O -0.41 -18.00 9.93 -148.98 -1.48 -19.47 16 3 C 0.10 4.45 1.99 30.60 0.06 4.51 16 4 H 0.04 1.87 7.79 -2.39 -0.02 1.85 16 5 C -0.12 -4.40 4.82 30.59 0.15 -4.25 16 6 C -0.08 -2.67 2.72 -10.79 -0.03 -2.70 16 7 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 8 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 9 C -0.11 -4.12 5.20 30.59 0.16 -3.96 16 10 C -0.10 -4.93 4.98 30.59 0.15 -4.78 16 11 C 0.05 2.64 1.85 -11.54 -0.02 2.62 16 12 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 13 C -0.52 -30.03 8.22 25.60 0.21 -29.82 16 14 H 0.04 2.61 7.70 -2.91 -0.02 2.59 16 15 C 0.01 0.53 5.30 84.66 0.45 0.98 16 16 N -0.92 -54.81 11.32 21.45 0.24 -54.57 16 17 Si 0.95 45.42 29.54 68.60 2.03 47.45 16 18 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 21 H 0.03 1.07 8.08 -2.39 -0.02 1.05 16 22 H 0.05 1.41 7.87 -2.38 -0.02 1.39 16 23 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 24 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 3.42 6.07 -2.39 -0.01 3.41 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -64.24 262.32 4.85 -59.39 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.04 Total: 5.17 kcal Atomic # 6 Polarization: -40.98 SS G_CDS: 3.02 Total: -37.96 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.24 Total: -54.57 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -1.48 Total: -19.47 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -64.24 4.85 -59.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546575.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.009 kcal (2) G-P(sol) polarization free energy of solvation -64.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds