Wall clock time and date at job start Mon Mar 30 2020 02:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00054 * 2 1 4 4 H 1.08998 * 109.47064 * 30.00804 * 3 2 1 5 5 C 1.52997 * 109.47503 * 270.00102 * 3 2 1 6 6 C 1.53000 * 109.47060 * 180.02562 * 5 3 2 7 7 H 1.09004 * 109.46724 * 180.02562 * 6 5 3 8 8 C 1.53002 * 109.47233 * 299.99657 * 6 5 3 9 9 C 1.52996 * 109.47328 * 60.00126 * 6 5 3 10 10 C 1.53002 * 109.46891 * 299.99597 * 9 6 5 11 11 C 1.52997 * 109.46978 * 60.00410 * 10 9 6 12 12 H 1.09001 * 109.47375 * 59.99908 * 11 10 9 13 13 C 1.50703 * 109.47084 * 179.97438 * 11 10 9 14 14 H 1.08001 * 119.99701 * 120.00324 * 13 11 10 15 15 C 1.37874 * 119.99789 * 299.99650 * 13 11 10 16 16 N 1.31511 * 120.00392 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99733 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.47443 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46979 * 120.00261 * 17 15 13 20 20 H 1.48498 * 109.47371 * 240.00161 * 17 15 13 21 21 H 1.08994 * 109.47474 * 179.97438 * 1 2 3 22 22 H 1.09005 * 109.47237 * 299.99876 * 1 2 3 23 23 H 1.09004 * 109.47007 * 59.99598 * 1 2 3 24 24 H 1.09002 * 109.47153 * 60.00043 * 5 3 2 25 25 H 1.09001 * 109.46832 * 300.00234 * 5 3 2 26 26 H 1.09000 * 109.46986 * 60.00203 * 8 6 5 27 27 H 1.08993 * 109.47662 * 180.02562 * 8 6 5 28 28 H 1.09002 * 109.47075 * 300.00932 * 8 6 5 29 29 H 1.08992 * 109.47554 * 59.99639 * 9 6 5 30 30 H 1.09004 * 109.47108 * 179.97438 * 9 6 5 31 31 H 1.09002 * 109.47097 * 180.02562 * 10 9 6 32 32 H 1.09001 * 109.47142 * 300.00176 * 10 9 6 33 33 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 2.2177 1.7714 -1.4424 6 6 2.8406 3.1689 -1.4423 7 1 2.9880 3.5010 -2.4700 8 6 1.9073 4.1432 -0.7209 9 6 4.1893 3.1260 -0.7213 10 6 3.9818 2.6601 0.7212 11 6 3.3590 1.2626 0.7211 12 1 4.0239 0.5685 0.2072 13 6 3.1552 0.8034 2.1420 14 1 2.1628 0.5659 2.4956 15 6 4.2358 0.6864 2.9903 16 7 5.4443 0.9751 2.5595 17 14 3.9830 0.1179 4.7517 18 1 2.5399 -0.1422 4.9857 19 1 4.7545 -1.1295 4.9847 20 1 4.4540 1.1728 5.6847 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.2569 1.8015 -1.9563 25 1 2.8829 1.0775 -1.9563 26 1 1.7595 3.8113 0.3068 27 1 2.3507 5.1389 -0.7212 28 1 0.9464 4.1737 -1.2346 29 1 4.8542 2.4319 -1.2352 30 1 4.6333 4.1216 -0.7216 31 1 4.9427 2.6300 1.2351 32 1 3.3169 3.3543 1.2352 33 1 6.2045 0.8931 3.1564 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546577.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:23 Heat of formation + Delta-G solvation = -89.213862 kcal Electronic energy + Delta-G solvation = -13626.378722 eV Core-core repulsion = 11457.442061 eV Total energy + Delta-G solvation = -2168.936661 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.35827 -37.46566 -35.15446 -32.01667 -30.71972 -28.23021 -27.26809 -26.01521 -22.95720 -22.30900 -19.41388 -18.41448 -17.53759 -16.70259 -16.07388 -15.72860 -15.06648 -14.81956 -14.56128 -14.31266 -13.90415 -13.22817 -13.03245 -12.88146 -12.67086 -12.51161 -12.30966 -12.05305 -11.82765 -11.66591 -11.43060 -11.12437 -10.99194 -10.58433 -10.35124 -9.98639 -8.04357 -6.16327 1.38744 1.40497 1.51997 2.44994 3.10902 3.27500 3.98887 4.05246 4.17601 4.37685 4.51086 4.62442 4.66640 4.73203 4.80197 4.81941 4.86671 4.90243 4.97834 5.16353 5.20570 5.29838 5.37128 5.42814 5.56779 5.65015 5.71775 5.97125 6.14983 6.43541 6.69173 6.93232 7.49457 8.99861 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.033357 B = 0.013822 C = 0.010886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.191093 B = 2025.318624 C = 2571.475437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.409 6.409 3 C 0.103 3.897 4 H 0.051 0.949 5 C -0.128 4.128 6 C -0.081 4.081 7 H 0.087 0.913 8 C -0.147 4.147 9 C -0.112 4.112 10 C -0.101 4.101 11 C 0.050 3.950 12 H -0.013 1.013 13 C -0.516 4.516 14 H 0.044 0.956 15 C 0.009 3.991 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.277 1.277 21 H 0.091 0.909 22 H 0.033 0.967 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.039 0.961 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 4.570 -6.471 10.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.328 6.328 3 C 0.046 3.954 4 H 0.069 0.931 5 C -0.166 4.166 6 C -0.099 4.099 7 H 0.105 0.895 8 C -0.204 4.204 9 C -0.150 4.150 10 C -0.139 4.139 11 C 0.032 3.968 12 H 0.005 0.995 13 C -0.554 4.554 14 H 0.063 0.937 15 C -0.188 4.188 16 N -0.560 5.560 17 Si 0.776 3.224 18 H -0.195 1.195 19 H -0.209 1.209 20 H -0.203 1.203 21 H 0.110 0.890 22 H 0.052 0.948 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.240 4.407 -6.407 10.625 hybrid contribution 0.110 -0.421 1.125 1.206 sum -7.130 3.986 -5.282 9.727 Atomic orbital electron populations 1.22857 0.81079 1.03003 0.99928 1.87921 1.20235 1.29633 1.95060 1.22262 0.95425 0.82842 0.94895 0.93142 1.22020 1.00901 0.97109 0.96594 1.21039 0.94786 0.94226 0.99860 0.89476 1.21904 0.99335 0.98838 1.00325 1.21618 0.96920 1.00201 0.96240 1.21421 1.01323 0.95937 0.95219 1.18701 0.90897 0.93642 0.93599 0.99525 1.21450 0.93091 1.43545 0.97320 0.93722 1.25696 0.95065 0.95829 1.02248 1.70022 0.98976 1.50277 1.36703 0.85621 0.78146 0.77928 0.80655 1.19456 1.20906 1.20309 0.89021 0.94831 0.92944 0.90846 0.93134 0.93743 0.91750 0.91483 0.93970 0.91647 0.92269 0.94266 0.93193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.82 113.37 1.23 2.12 16 2 O -0.41 -18.08 9.93 -148.98 -1.48 -19.56 16 3 C 0.10 4.44 1.72 30.60 0.05 4.49 16 4 H 0.05 2.13 6.07 -2.39 -0.01 2.11 16 5 C -0.13 -4.51 5.07 30.59 0.15 -4.36 16 6 C -0.08 -2.53 3.19 -10.79 -0.03 -2.57 16 7 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 8 C -0.15 -4.15 8.50 71.98 0.61 -3.54 16 9 C -0.11 -4.24 5.45 30.59 0.17 -4.07 16 10 C -0.10 -4.81 4.71 30.59 0.14 -4.67 16 11 C 0.05 2.63 1.84 -11.54 -0.02 2.61 16 12 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 13 C -0.52 -29.81 8.23 25.60 0.21 -29.60 16 14 H 0.04 2.60 7.70 -2.91 -0.02 2.57 16 15 C 0.01 0.53 5.30 84.65 0.45 0.98 16 16 N -0.92 -54.83 11.32 21.45 0.24 -54.59 16 17 Si 0.95 45.39 29.54 68.60 2.03 47.41 16 18 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 21 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 22 H 0.03 1.07 8.09 -2.38 -0.02 1.05 16 23 H 0.05 1.41 7.87 -2.38 -0.02 1.39 16 24 H 0.07 2.17 7.87 -2.39 -0.02 2.16 16 25 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.04 1.47 4.81 -2.39 -0.01 1.46 16 27 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 32 H 0.04 1.81 6.43 -2.39 -0.02 1.80 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -64.35 255.29 4.81 -59.54 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 1.06 Total: 5.82 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 2.96 Total: -38.62 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.24 Total: -54.59 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -1.48 Total: -19.56 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -64.35 4.81 -59.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546577.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.677 kcal (2) G-P(sol) polarization free energy of solvation -64.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds