Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00094 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99905 * 3 2 1 5 5 C 1.52999 * 109.47616 * 270.00173 * 3 2 1 6 6 C 1.52997 * 109.47317 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 8 8 C 1.53002 * 109.46817 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 6 5 11 11 C 1.52997 * 109.46817 * 60.00194 * 10 9 6 12 12 H 1.09001 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 60.00357 * 11 10 9 14 14 H 1.08003 * 120.00087 * 239.99915 * 13 11 10 15 15 C 1.37872 * 120.00497 * 59.99565 * 13 11 10 16 16 N 1.31523 * 119.99576 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00713 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46977 * 89.99695 * 17 15 13 19 19 H 1.48494 * 109.47494 * 210.00423 * 17 15 13 20 20 H 1.48498 * 109.46802 * 330.00400 * 17 15 13 21 21 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47707 * 300.00141 * 1 2 3 23 23 H 1.09005 * 109.47119 * 59.99619 * 1 2 3 24 24 H 1.08996 * 109.46929 * 59.99102 * 5 3 2 25 25 H 1.09002 * 109.46716 * 299.99907 * 5 3 2 26 26 H 1.08996 * 109.47407 * 60.00219 * 8 6 5 27 27 H 1.09000 * 109.46986 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.47075 * 299.99262 * 8 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 9 6 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 9 6 5 31 31 H 1.09002 * 109.47075 * 300.00932 * 10 9 6 32 32 H 1.08993 * 109.47662 * 180.02562 * 10 9 6 33 33 H 0.96998 * 120.00173 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4424 6 6 2.8394 3.1694 -1.4424 7 1 2.1737 3.8631 -0.9287 8 6 3.0474 3.6351 -2.8849 9 6 4.1880 3.1278 -0.7209 10 6 3.9805 2.6618 0.7216 11 6 3.3588 1.2639 0.7215 12 1 3.2106 0.9321 1.7492 13 6 4.2791 0.3049 0.0114 14 1 3.9364 -0.2223 -0.8668 15 6 5.5585 0.1003 0.4825 16 7 5.9757 0.7419 1.5522 17 14 6.6995 -1.0879 -0.3982 18 1 7.4664 -0.3579 -1.4395 19 1 7.6412 -1.6876 0.5810 20 1 5.8979 -2.1628 -1.0362 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.2569 1.8014 -1.9563 25 1 2.8829 1.0776 -1.9563 26 1 2.0868 3.6647 -3.3992 27 1 3.4899 4.6312 -2.8849 28 1 3.7133 2.9414 -3.3982 29 1 4.8535 2.4342 -1.2346 30 1 4.6307 4.1239 -0.7205 31 1 3.3148 3.3555 1.2353 32 1 4.9411 2.6326 1.2357 33 1 6.8757 0.5978 1.8839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259546578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -72.181388 kcal Electronic energy + Delta-G solvation = -13647.184176 eV Core-core repulsion = 11478.986098 eV Total energy + Delta-G solvation = -2168.198078 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.53291 -35.85607 -33.06638 -30.57876 -28.99380 -26.23589 -25.77931 -24.04800 -21.24163 -20.13743 -18.77822 -15.92553 -15.25663 -14.95350 -14.53694 -14.05121 -13.85405 -13.19588 -12.82281 -12.43819 -11.95004 -11.86019 -11.08838 -11.05519 -10.91641 -10.85079 -10.71065 -10.39897 -10.04576 -10.00610 -9.51122 -9.36211 -9.16748 -8.69578 -8.41614 -8.10314 -5.86142 -3.87163 3.37841 3.44758 3.49880 4.54717 4.66282 5.46080 5.53266 5.59519 5.67194 5.77837 5.81898 5.98894 6.10711 6.21855 6.26125 6.33828 6.37434 6.55205 6.60727 6.68423 6.80617 6.87692 7.13471 7.13933 7.48302 7.55210 7.83688 7.87816 8.11478 8.31737 8.60951 9.13648 9.73778 11.20725 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.015139 C = 0.012320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.346223 B = 1849.036347 C = 2272.116208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.369 6.369 3 C 0.099 3.901 4 H 0.030 0.970 5 C -0.122 4.122 6 C -0.085 4.085 7 H 0.053 0.947 8 C -0.143 4.143 9 C -0.099 4.099 10 C -0.108 4.108 11 C 0.049 3.951 12 H 0.029 0.971 13 C -0.481 4.481 14 H 0.059 0.941 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.885 3.115 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.275 1.275 21 H 0.073 0.927 22 H 0.030 0.970 23 H 0.028 0.972 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.033 0.967 31 H 0.013 0.987 32 H 0.096 0.904 33 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 3.756 -4.598 8.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.287 6.287 3 C 0.042 3.958 4 H 0.048 0.952 5 C -0.160 4.160 6 C -0.104 4.104 7 H 0.071 0.929 8 C -0.200 4.200 9 C -0.136 4.136 10 C -0.146 4.146 11 C 0.030 3.970 12 H 0.047 0.953 13 C -0.520 4.520 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.537 5.537 17 Si 0.714 3.286 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.200 1.200 21 H 0.092 0.908 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.054 0.946 25 H 0.097 0.903 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.032 0.968 32 H 0.114 0.886 33 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.385 3.596 -4.487 8.593 hybrid contribution 0.391 -0.397 -0.461 0.723 sum -5.994 3.199 -4.948 8.405 Atomic orbital electron populations 1.22655 0.84103 1.01302 0.98671 1.88089 1.16709 1.29106 1.94835 1.22363 0.96331 0.82094 0.95031 0.95180 1.21948 0.99094 0.96899 0.98044 1.21045 0.98232 0.95981 0.95113 0.92895 1.21815 1.00584 1.00512 0.97081 1.21457 0.95398 0.98936 0.97813 1.21525 1.02652 0.95710 0.94688 1.18792 0.88755 0.93717 0.95700 0.95298 1.21036 0.96468 1.22726 1.11741 0.92317 1.24923 0.98150 0.96108 0.95119 1.69867 1.17976 1.42701 1.23203 0.86690 0.80835 0.81683 0.79401 1.20946 1.21497 1.19988 0.90821 0.95158 0.95323 0.94591 0.90317 0.93798 0.93405 0.92735 0.90891 0.94796 0.96776 0.88551 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 101.05 1.09 1.59 16 2 O -0.37 -8.16 9.94 -35.23 -0.35 -8.51 16 3 C 0.10 2.16 2.26 -26.73 -0.06 2.10 16 4 H 0.03 0.61 7.79 -51.93 -0.40 0.21 16 5 C -0.12 -2.41 4.59 -26.73 -0.12 -2.54 16 6 C -0.09 -1.56 2.72 -90.62 -0.25 -1.80 16 7 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.14 -2.21 9.19 37.16 0.34 -1.86 16 9 C -0.10 -2.06 4.98 -26.73 -0.13 -2.20 16 10 C -0.11 -2.54 5.24 -26.73 -0.14 -2.68 16 11 C 0.05 1.24 2.33 -91.77 -0.21 1.02 16 12 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 13 C -0.48 -13.20 6.28 -34.44 -0.22 -13.42 16 14 H 0.06 1.65 6.66 -52.48 -0.35 1.30 16 15 C 0.06 1.57 5.30 -17.82 -0.09 1.48 16 16 N -0.90 -25.77 11.32 55.43 0.63 -25.14 16 17 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 21 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 22 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 23 H 0.03 0.43 7.87 -51.93 -0.41 0.02 16 24 H 0.04 0.63 7.87 -51.93 -0.41 0.23 16 25 H 0.08 1.72 6.62 -51.93 -0.34 1.37 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.69 7.22 -51.93 -0.37 1.32 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 257.46 15.07 3.88 3.88 Total: -1.00 -28.69 257.46 -6.20 -34.89 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.54 Total: -3.54 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 0.21 Total: -18.31 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.63 Total: -25.14 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: -0.35 Total: -8.51 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.69 -6.20 -34.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.288 kcal (2) G-P(sol) polarization free energy of solvation -28.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds