Wall clock time and date at job start Mon Mar 30 2020 02:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42900 * 114.00094 * 2 1 4 4 H 1.09002 * 109.47002 * 29.99905 * 3 2 1 5 5 C 1.52999 * 109.47616 * 270.00173 * 3 2 1 6 6 C 1.52997 * 109.47317 * 179.97438 * 5 3 2 7 7 H 1.09002 * 109.47153 * 299.99641 * 6 5 3 8 8 C 1.53002 * 109.46817 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47060 * 59.99960 * 6 5 3 10 10 C 1.53002 * 109.47233 * 299.99657 * 9 6 5 11 11 C 1.52997 * 109.46817 * 60.00194 * 10 9 6 12 12 H 1.09001 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.50696 * 109.47242 * 60.00357 * 11 10 9 14 14 H 1.08003 * 120.00087 * 239.99915 * 13 11 10 15 15 C 1.37872 * 120.00497 * 59.99565 * 13 11 10 16 16 N 1.31523 * 119.99576 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00713 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46977 * 89.99695 * 17 15 13 19 19 H 1.48494 * 109.47494 * 210.00423 * 17 15 13 20 20 H 1.48498 * 109.46802 * 330.00400 * 17 15 13 21 21 H 1.09002 * 109.47087 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47707 * 300.00141 * 1 2 3 23 23 H 1.09005 * 109.47119 * 59.99619 * 1 2 3 24 24 H 1.08996 * 109.46929 * 59.99102 * 5 3 2 25 25 H 1.09002 * 109.46716 * 299.99907 * 5 3 2 26 26 H 1.08996 * 109.47407 * 60.00219 * 8 6 5 27 27 H 1.09000 * 109.46986 * 179.97438 * 8 6 5 28 28 H 1.09002 * 109.47075 * 299.99262 * 8 6 5 29 29 H 1.08992 * 109.47399 * 59.99823 * 9 6 5 30 30 H 1.09004 * 109.46724 * 180.02562 * 9 6 5 31 31 H 1.09002 * 109.47075 * 300.00932 * 10 9 6 32 32 H 1.08993 * 109.47662 * 180.02562 * 10 9 6 33 33 H 0.96998 * 120.00173 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2176 1.7715 -1.4424 6 6 2.8394 3.1694 -1.4424 7 1 2.1737 3.8631 -0.9287 8 6 3.0474 3.6351 -2.8849 9 6 4.1880 3.1278 -0.7209 10 6 3.9805 2.6618 0.7216 11 6 3.3588 1.2639 0.7215 12 1 3.2106 0.9321 1.7492 13 6 4.2791 0.3049 0.0114 14 1 3.9364 -0.2223 -0.8668 15 6 5.5585 0.1003 0.4825 16 7 5.9757 0.7419 1.5522 17 14 6.6995 -1.0879 -0.3982 18 1 7.4664 -0.3579 -1.4395 19 1 7.6412 -1.6876 0.5810 20 1 5.8979 -2.1628 -1.0362 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 1.2569 1.8014 -1.9563 25 1 2.8829 1.0776 -1.9563 26 1 2.0868 3.6647 -3.3992 27 1 3.4899 4.6312 -2.8849 28 1 3.7133 2.9414 -3.3982 29 1 4.8535 2.4342 -1.2346 30 1 4.6307 4.1239 -0.7205 31 1 3.3148 3.3555 1.2353 32 1 4.9411 2.6326 1.2357 33 1 6.8757 0.5978 1.8839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259546578.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:25 Heat of formation + Delta-G solvation = -89.140721 kcal Electronic energy + Delta-G solvation = -13647.919588 eV Core-core repulsion = 11478.986098 eV Total energy + Delta-G solvation = -2168.933489 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.20992 -37.45267 -34.98113 -32.41286 -30.66380 -27.89632 -27.26081 -25.89774 -22.93781 -21.76285 -20.57918 -17.84138 -17.05198 -16.74460 -16.13547 -15.80377 -15.36842 -14.87757 -14.33430 -14.05121 -13.66550 -13.47325 -12.81978 -12.74186 -12.65522 -12.41073 -12.31526 -12.19651 -11.93749 -11.61902 -11.27648 -11.09595 -10.83522 -10.63767 -10.39383 -9.94787 -7.99855 -6.06854 1.40795 1.42419 1.52317 2.48592 3.11956 3.33575 4.03912 4.10362 4.25347 4.36020 4.55676 4.63619 4.67800 4.73449 4.83877 4.86859 4.92187 4.95145 5.03358 5.11184 5.22781 5.37033 5.43357 5.51923 5.65996 5.76720 5.81737 5.95457 6.11507 6.45998 6.71531 6.99871 7.56575 9.05671 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.027762 B = 0.015139 C = 0.012320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.346223 B = 1849.036347 C = 2272.116208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.102 3.898 4 H 0.046 0.954 5 C -0.115 4.115 6 C -0.081 4.081 7 H 0.071 0.929 8 C -0.137 4.137 9 C -0.093 4.093 10 C -0.104 4.104 11 C 0.043 3.957 12 H -0.015 1.015 13 C -0.485 4.485 14 H 0.048 0.952 15 C 0.009 3.991 16 N -0.923 5.923 17 Si 0.942 3.058 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.091 0.909 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.043 0.957 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.062 0.938 33 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.839 4.533 -6.102 10.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.326 6.326 3 C 0.045 3.955 4 H 0.064 0.936 5 C -0.153 4.153 6 C -0.100 4.100 7 H 0.089 0.911 8 C -0.194 4.194 9 C -0.130 4.130 10 C -0.142 4.142 11 C 0.024 3.976 12 H 0.003 0.997 13 C -0.523 4.523 14 H 0.066 0.934 15 C -0.188 4.188 16 N -0.564 5.564 17 Si 0.768 3.232 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.109 0.891 22 H 0.059 0.941 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.085 0.915 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.576 4.373 -6.001 10.608 hybrid contribution 0.692 -0.670 0.068 0.965 sum -6.884 3.704 -5.933 9.814 Atomic orbital electron populations 1.22912 0.81136 1.03089 1.00146 1.88017 1.20049 1.29387 1.95141 1.22210 0.94528 0.82649 0.96113 0.93616 1.21871 1.00000 0.97064 0.96352 1.21030 0.96444 0.95559 0.96962 0.91080 1.21757 1.01838 1.00973 0.94872 1.21361 0.96943 0.98915 0.95813 1.21387 1.01030 0.95241 0.96575 1.18779 0.91110 0.94177 0.93517 0.99658 1.21186 0.96969 1.22878 1.11298 0.93425 1.25603 0.99616 0.97683 0.95868 1.70007 1.18180 1.43870 1.24358 0.85799 0.79052 0.79795 0.78508 1.20017 1.21299 1.19936 0.89051 0.94060 0.93300 0.91780 0.92973 0.91527 0.91793 0.93666 0.93811 0.92907 0.95086 0.91952 0.93443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.72 10.82 113.37 1.23 1.95 16 2 O -0.41 -17.69 9.94 -148.98 -1.48 -19.17 16 3 C 0.10 4.36 2.26 30.60 0.07 4.43 16 4 H 0.05 1.78 7.79 -2.39 -0.02 1.76 16 5 C -0.12 -4.32 4.59 30.59 0.14 -4.18 16 6 C -0.08 -2.75 2.72 -10.79 -0.03 -2.78 16 7 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 8 C -0.14 -3.76 9.19 71.98 0.66 -3.10 16 9 C -0.09 -3.80 4.98 30.60 0.15 -3.65 16 10 C -0.10 -4.95 5.24 30.59 0.16 -4.79 16 11 C 0.04 2.21 2.33 -11.54 -0.03 2.18 16 12 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 13 C -0.48 -27.24 6.28 25.60 0.16 -27.08 16 14 H 0.05 2.73 6.66 -2.91 -0.02 2.71 16 15 C 0.01 0.52 5.30 84.65 0.45 0.97 16 16 N -0.92 -54.57 11.32 21.45 0.24 -54.32 16 17 Si 0.94 45.31 29.54 68.60 2.03 47.33 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 19 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 20 H -0.27 -13.07 7.11 99.48 0.71 -12.37 16 21 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 22 H 0.04 1.16 8.08 -2.39 -0.02 1.14 16 23 H 0.05 1.29 7.87 -2.38 -0.02 1.27 16 24 H 0.06 2.04 7.87 -2.39 -0.02 2.02 16 25 H 0.05 2.23 6.62 -2.39 -0.02 2.21 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 2.03 7.22 -2.39 -0.02 2.01 16 30 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.06 3.38 6.07 -2.39 -0.01 3.37 16 33 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -62.83 257.46 4.80 -58.03 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.05 Total: 4.18 kcal Atomic # 6 Polarization: -39.01 SS G_CDS: 2.96 Total: -36.04 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.24 Total: -54.32 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -1.48 Total: -19.17 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -62.83 4.80 -58.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259546578.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.112 kcal (2) G-P(sol) polarization free energy of solvation -62.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds