Wall clock time and date at job start Mon Mar 30 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.48898 * 2 1 4 4 O 1.42902 * 109.48049 * 239.97313 * 2 1 3 5 5 C 1.42903 * 114.10062 * 178.85626 * 4 2 1 6 6 C 1.53094 * 109.41097 * 61.15895 * 5 4 2 7 7 C 1.53185 * 109.16439 * 302.39615 * 6 5 4 8 8 C 1.53088 * 109.47973 * 120.03209 * 2 1 3 9 9 H 1.08996 * 109.57570 * 57.65154 * 8 2 1 10 10 C 1.53001 * 109.52306 * 297.49564 * 8 2 1 11 11 C 1.50694 * 109.47168 * 175.31621 * 10 8 2 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08992 * 109.47365 * 299.96972 * 1 2 3 20 20 H 1.09006 * 109.47368 * 59.96985 * 1 2 3 21 21 H 1.09002 * 109.47410 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47338 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47534 * 300.02692 * 3 2 1 24 24 H 1.09000 * 109.47354 * 60.02941 * 3 2 1 25 25 H 1.09000 * 109.47820 * 301.18212 * 5 4 2 26 26 H 1.08997 * 109.48242 * 181.13601 * 5 4 2 27 27 H 1.08998 * 109.52257 * 182.48571 * 6 5 4 28 28 H 1.09002 * 109.52183 * 62.29467 * 6 5 4 29 29 H 1.08998 * 109.53597 * 297.11182 * 7 6 5 30 30 H 1.08998 * 109.54075 * 176.84996 * 7 6 5 31 31 H 1.09007 * 109.46922 * 55.31323 * 10 8 2 32 32 H 1.09003 * 109.46836 * 295.32078 * 10 8 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 8 2.0066 -0.6742 -1.1664 5 6 3.4307 -0.7093 -1.2792 6 6 4.0176 -1.4601 -0.0810 7 6 3.5710 -0.7710 1.2121 8 6 2.0405 -0.7223 1.2495 9 1 1.6443 -1.7375 1.2720 10 6 1.5834 0.0327 2.4992 11 6 1.9873 -0.7396 3.7286 12 1 2.5174 -1.6752 3.6287 13 6 1.6800 -0.2517 4.9811 14 7 1.0348 0.8878 5.1028 15 14 2.1801 -1.2095 6.5049 16 1 1.7364 -0.4765 7.7179 17 1 1.5448 -2.5513 6.4768 18 1 3.6570 -1.3614 6.5315 19 1 -0.3633 0.5133 0.8902 20 1 -0.3634 0.5143 -0.8897 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1304 1.4420 -0.0005 23 1 1.6769 1.9564 -0.8897 24 1 1.6777 1.9561 0.8902 25 1 3.8192 0.3090 -1.2958 26 1 3.7099 -1.2203 -2.2005 27 1 5.1058 -1.4498 -0.1422 28 1 3.6612 -2.4902 -0.0865 29 1 3.9689 0.2434 1.2408 30 1 3.9391 -1.3328 2.0705 31 1 0.4992 0.1443 2.4800 32 1 2.0496 1.0178 2.5194 33 1 0.8184 1.2308 5.9840 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259582228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:45 Heat of formation + Delta-G solvation = -73.138808 kcal Electronic energy + Delta-G solvation = -13548.512486 eV Core-core repulsion = 11380.272892 eV Total energy + Delta-G solvation = -2168.239594 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.56374 -34.50822 -32.89718 -32.28128 -28.83600 -26.89996 -26.25097 -23.92974 -21.46868 -20.95741 -18.09742 -16.60821 -15.36224 -15.31247 -14.46746 -14.34302 -13.84472 -13.30027 -12.67435 -12.17215 -12.10242 -11.88042 -11.70503 -11.33776 -11.31255 -10.98588 -10.77855 -10.64365 -10.42597 -10.22998 -9.94673 -9.45626 -9.25261 -9.04712 -8.51554 -8.30800 -5.98683 -3.99589 3.33355 3.37941 3.40436 4.27603 4.47044 5.32595 5.34178 5.38302 5.45362 5.46854 5.66867 5.74635 5.84843 6.10374 6.11541 6.20987 6.26353 6.34325 6.36982 6.53047 6.64171 6.67827 6.78217 6.96815 7.08254 7.11735 7.68168 7.80438 7.86913 8.00949 8.45819 9.06016 9.63543 11.12472 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047275 B = 0.010557 C = 0.009404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.137460 B = 2651.621970 C = 2976.855799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.113 3.887 3 C -0.176 4.176 4 O -0.385 6.385 5 C 0.062 3.938 6 C -0.157 4.157 7 C -0.108 4.108 8 C -0.100 4.100 9 H 0.062 0.938 10 C 0.028 3.972 11 C -0.515 4.515 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.889 3.111 16 H -0.288 1.288 17 H -0.277 1.277 18 H -0.278 1.278 19 H 0.080 0.920 20 H 0.050 0.950 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.021 0.979 32 H 0.020 0.980 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.157 -1.193 -9.595 10.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 C -0.233 4.233 4 O -0.305 6.305 5 C -0.015 4.015 6 C -0.195 4.195 7 C -0.145 4.145 8 C -0.118 4.118 9 H 0.080 0.920 10 C -0.009 4.009 11 C -0.554 4.554 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.717 3.283 16 H -0.214 1.214 17 H -0.203 1.203 18 H -0.203 1.203 19 H 0.099 0.901 20 H 0.069 0.931 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.065 0.935 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.955 -1.146 -9.592 10.102 hybrid contribution 0.536 -0.402 1.159 1.339 sum 3.491 -1.549 -8.433 9.257 Atomic orbital electron populations 1.21786 0.93002 1.02346 1.02049 1.21601 0.94410 0.91094 0.85428 1.22446 1.01460 0.97052 1.02313 1.87868 1.20278 1.77954 1.44352 1.22450 0.82195 0.99151 0.97699 1.22252 0.99897 1.00526 0.96843 1.21591 0.96664 1.00246 0.96030 1.21775 0.94661 0.99960 0.95450 0.91960 1.19227 0.96597 0.95209 0.89853 1.21214 1.36398 1.06781 0.90962 0.92784 1.24998 0.95348 0.95042 0.99009 1.69946 1.40585 1.19560 1.23469 0.86710 0.78914 0.80103 0.82588 1.21353 1.20308 1.20344 0.90082 0.93131 0.92416 0.92444 0.93246 0.90413 0.93494 0.90151 0.92042 0.91753 0.92450 0.91011 0.96051 0.96197 0.93029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.56 37.16 0.32 -2.05 16 2 C 0.11 2.10 0.88 -90.58 -0.08 2.02 16 3 C -0.18 -3.04 7.52 37.15 0.28 -2.76 16 4 O -0.38 -6.92 10.24 -35.23 -0.36 -7.28 16 5 C 0.06 0.94 6.52 37.21 0.24 1.18 16 6 C -0.16 -2.47 6.14 -26.59 -0.16 -2.63 16 7 C -0.11 -2.06 4.76 -26.55 -0.13 -2.19 16 8 C -0.10 -2.09 1.62 -90.48 -0.15 -2.23 16 9 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 10 C 0.03 0.70 3.71 -27.89 -0.10 0.60 16 11 C -0.52 -14.29 8.45 -34.44 -0.29 -14.59 16 12 H 0.05 1.47 7.06 -52.49 -0.37 1.10 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 15 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H 0.08 1.49 6.40 -51.93 -0.33 1.16 16 20 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.06 0.96 4.97 -51.93 -0.26 0.70 16 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.08 1.45 6.50 -51.93 -0.34 1.11 16 25 H 0.05 0.68 6.34 -51.93 -0.33 0.35 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 1.09 6.62 -51.93 -0.34 0.75 16 30 H 0.07 1.47 7.06 -51.93 -0.37 1.10 16 31 H 0.02 0.56 6.28 -51.92 -0.33 0.24 16 32 H 0.02 0.52 6.66 -51.93 -0.35 0.18 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 251.17 15.07 3.79 3.79 Total: -1.00 -29.26 251.17 -6.13 -35.39 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -5.10 Total: -1.53 kcal Atomic # 6 Polarization: -20.97 SS G_CDS: -0.17 Total: -21.14 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.74 Total: -25.82 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.36 Total: -7.28 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.26 -6.13 -35.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259582228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.749 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds