Wall clock time and date at job start Mon Mar 30 2020 01:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.48898 * 2 1 4 4 O 1.42902 * 109.48049 * 239.97313 * 2 1 3 5 5 C 1.42903 * 114.10062 * 178.85626 * 4 2 1 6 6 C 1.53094 * 109.41097 * 61.15895 * 5 4 2 7 7 C 1.53185 * 109.16439 * 302.39615 * 6 5 4 8 8 C 1.53088 * 109.47973 * 120.03209 * 2 1 3 9 9 H 1.08996 * 109.57570 * 57.65154 * 8 2 1 10 10 C 1.53001 * 109.52306 * 297.49564 * 8 2 1 11 11 C 1.50694 * 109.47168 * 175.31621 * 10 8 2 12 12 H 1.08000 * 120.00563 * 0.02562 * 11 10 8 13 13 C 1.37885 * 119.99902 * 180.02562 * 11 10 8 14 14 N 1.31516 * 119.99913 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.46985 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47276 * 299.99832 * 15 13 11 18 18 H 1.48498 * 109.47150 * 60.00043 * 15 13 11 19 19 H 1.08992 * 109.47365 * 299.96972 * 1 2 3 20 20 H 1.09006 * 109.47368 * 59.96985 * 1 2 3 21 21 H 1.09002 * 109.47410 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47338 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47534 * 300.02692 * 3 2 1 24 24 H 1.09000 * 109.47354 * 60.02941 * 3 2 1 25 25 H 1.09000 * 109.47820 * 301.18212 * 5 4 2 26 26 H 1.08997 * 109.48242 * 181.13601 * 5 4 2 27 27 H 1.08998 * 109.52257 * 182.48571 * 6 5 4 28 28 H 1.09002 * 109.52183 * 62.29467 * 6 5 4 29 29 H 1.08998 * 109.53597 * 297.11182 * 7 6 5 30 30 H 1.08998 * 109.54075 * 176.84996 * 7 6 5 31 31 H 1.09007 * 109.46922 * 55.31323 * 10 8 2 32 32 H 1.09003 * 109.46836 * 295.32078 * 10 8 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 8 2.0066 -0.6742 -1.1664 5 6 3.4307 -0.7093 -1.2792 6 6 4.0176 -1.4601 -0.0810 7 6 3.5710 -0.7710 1.2121 8 6 2.0405 -0.7223 1.2495 9 1 1.6443 -1.7375 1.2720 10 6 1.5834 0.0327 2.4992 11 6 1.9873 -0.7396 3.7286 12 1 2.5174 -1.6752 3.6287 13 6 1.6800 -0.2517 4.9811 14 7 1.0348 0.8878 5.1028 15 14 2.1801 -1.2095 6.5049 16 1 1.7364 -0.4765 7.7179 17 1 1.5448 -2.5513 6.4768 18 1 3.6570 -1.3614 6.5315 19 1 -0.3633 0.5133 0.8902 20 1 -0.3634 0.5143 -0.8897 21 1 -0.3634 -1.0277 -0.0005 22 1 3.1304 1.4420 -0.0005 23 1 1.6769 1.9564 -0.8897 24 1 1.6777 1.9561 0.8902 25 1 3.8192 0.3090 -1.2958 26 1 3.7099 -1.2203 -2.2005 27 1 5.1058 -1.4498 -0.1422 28 1 3.6612 -2.4902 -0.0865 29 1 3.9689 0.2434 1.2408 30 1 3.9391 -1.3328 2.0705 31 1 0.4992 0.1443 2.4800 32 1 2.0496 1.0178 2.5194 33 1 0.8184 1.2308 5.9840 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259582228.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:45 Heat of formation + Delta-G solvation = -90.621453 kcal Electronic energy + Delta-G solvation = -13549.270590 eV Core-core repulsion = 11380.272892 eV Total energy + Delta-G solvation = -2168.997699 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.02289 -36.22212 -34.33436 -34.20526 -30.57228 -28.34228 -27.88108 -25.73693 -23.14730 -22.43406 -19.59484 -18.65310 -16.90434 -16.79162 -16.38565 -15.81494 -15.30012 -14.90543 -14.12729 -14.04341 -13.75688 -13.46530 -13.25092 -12.91571 -12.84585 -12.68726 -12.48805 -12.26110 -12.02707 -11.85602 -11.64864 -11.29092 -10.94642 -10.75764 -10.46949 -10.06574 -8.16704 -6.25012 1.39065 1.40957 1.48709 2.41538 2.94279 3.16292 3.90588 3.96403 4.05618 4.11586 4.23916 4.43532 4.58811 4.63250 4.72037 4.84907 4.90118 4.91616 5.00749 5.08795 5.14662 5.22982 5.26357 5.35216 5.39120 5.48964 5.61177 5.84407 5.89604 6.30347 6.46767 6.89934 7.42298 8.94336 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047275 B = 0.010557 C = 0.009404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.137460 B = 2651.621970 C = 2976.855799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.116 3.884 3 C -0.170 4.170 4 O -0.392 6.392 5 C 0.055 3.945 6 C -0.150 4.150 7 C -0.107 4.107 8 C -0.095 4.095 9 H 0.045 0.955 10 C 0.038 3.962 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.955 3.045 16 H -0.284 1.284 17 H -0.270 1.270 18 H -0.269 1.269 19 H 0.063 0.937 20 H 0.073 0.927 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.071 0.929 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.113 0.887 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.055 0.945 30 H 0.051 0.949 31 H -0.002 1.002 32 H 0.000 1.000 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.251 -1.841 -10.635 11.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.077 3.923 3 C -0.227 4.227 4 O -0.312 6.312 5 C -0.021 4.021 6 C -0.187 4.187 7 C -0.145 4.145 8 C -0.114 4.114 9 H 0.064 0.936 10 C 0.001 3.999 11 C -0.571 4.571 12 H 0.072 0.928 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.781 3.219 16 H -0.209 1.209 17 H -0.196 1.196 18 H -0.194 1.194 19 H 0.082 0.918 20 H 0.092 0.908 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.131 0.869 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.058 -1.804 -10.646 11.535 hybrid contribution 0.202 -0.198 1.456 1.483 sum 4.260 -2.002 -9.189 10.325 Atomic orbital electron populations 1.21755 0.92737 1.02327 1.02307 1.21461 0.94803 0.91433 0.84611 1.22375 1.01872 0.96167 1.02317 1.87861 1.22201 1.77848 1.43290 1.22739 0.80569 1.00191 0.98637 1.22204 1.01713 0.99895 0.94912 1.21535 0.95054 1.00352 0.97558 1.21633 0.96212 0.98556 0.94966 0.93629 1.19055 0.94919 0.94526 0.91412 1.21614 1.36210 1.06992 0.92255 0.92770 1.25858 0.95337 0.96002 1.02317 1.70073 1.41693 1.21103 1.24249 0.85647 0.78929 0.78779 0.78585 1.20902 1.19553 1.19365 0.91833 0.90801 0.92619 0.91746 0.91005 0.92562 0.92407 0.86945 0.89193 0.91980 0.92618 0.93010 0.98334 0.98140 0.92940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 8.56 71.98 0.62 -4.06 16 2 C 0.12 4.20 0.88 -10.77 -0.01 4.19 16 3 C -0.17 -5.71 7.52 71.98 0.54 -5.17 16 4 O -0.39 -13.14 10.24 -148.98 -1.52 -14.67 16 5 C 0.05 1.47 6.52 72.01 0.47 1.94 16 6 C -0.15 -4.31 6.14 30.69 0.19 -4.12 16 7 C -0.11 -4.04 4.76 30.71 0.15 -3.89 16 8 C -0.09 -4.01 1.62 -10.71 -0.02 -4.02 16 9 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 10 C 0.04 1.96 3.71 29.85 0.11 2.07 16 11 C -0.53 -30.15 8.45 25.60 0.22 -29.93 16 12 H 0.05 2.99 7.06 -2.91 -0.02 2.97 16 13 C 0.00 0.14 5.46 84.66 0.46 0.61 16 14 N -0.93 -56.27 13.29 21.45 0.28 -55.98 16 15 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 16 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 19 H 0.06 2.41 6.40 -2.39 -0.02 2.40 16 20 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 21 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 22 H 0.06 2.04 4.97 -2.39 -0.01 2.03 16 23 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 24 H 0.06 2.12 6.50 -2.39 -0.02 2.10 16 25 H 0.06 1.45 6.34 -2.39 -0.02 1.44 16 26 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 27 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 29 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 30 H 0.05 2.11 7.06 -2.39 -0.02 2.10 16 31 H 0.00 -0.09 6.28 -2.38 -0.01 -0.10 16 32 H 0.00 0.02 6.66 -2.39 -0.02 0.00 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -62.57 251.17 4.58 -57.99 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.07 Total: 8.49 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 2.72 Total: -42.39 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.52 Total: -14.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -62.57 4.58 -57.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259582228.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.636 kcal (2) G-P(sol) polarization free energy of solvation -62.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds