Wall clock time and date at job start Mon Mar 30 2020 01:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.49113 * 2 1 4 4 O 1.42906 * 109.48019 * 239.97276 * 2 1 3 5 5 C 1.42903 * 114.09431 * 301.17375 * 4 2 1 6 6 C 1.53095 * 109.41530 * 298.84283 * 5 4 2 7 7 C 1.53176 * 109.16286 * 57.61206 * 6 5 4 8 8 C 1.53095 * 109.48032 * 120.02712 * 2 1 3 9 9 H 1.08998 * 109.52079 * 182.27649 * 8 2 1 10 10 C 1.52996 * 109.52491 * 302.47244 * 8 2 1 11 11 C 1.50697 * 109.47249 * 184.68534 * 10 8 2 12 12 H 1.08004 * 120.00055 * 359.97438 * 11 10 8 13 13 C 1.37881 * 119.99833 * 179.97438 * 11 10 8 14 14 N 1.31509 * 119.99987 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99591 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47487 * 60.00392 * 15 13 11 17 17 H 1.48507 * 109.46795 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47172 * 300.00259 * 15 13 11 19 19 H 1.09007 * 109.47355 * 299.97357 * 1 2 3 20 20 H 1.09004 * 109.47449 * 59.96905 * 1 2 3 21 21 H 1.09001 * 109.47154 * 179.97438 * 1 2 3 22 22 H 1.08994 * 109.47573 * 180.02562 * 3 2 1 23 23 H 1.09004 * 109.47569 * 300.02996 * 3 2 1 24 24 H 1.09009 * 109.47458 * 60.02789 * 3 2 1 25 25 H 1.08997 * 109.48187 * 178.86172 * 5 4 2 26 26 H 1.08997 * 109.47990 * 58.82878 * 5 4 2 27 27 H 1.09001 * 109.52293 * 297.69958 * 6 5 4 28 28 H 1.09007 * 109.52035 * 177.51726 * 6 5 4 29 29 H 1.08994 * 109.54424 * 62.88738 * 7 6 5 30 30 H 1.08998 * 109.54003 * 183.15247 * 7 6 5 31 31 H 1.09006 * 109.46799 * 304.68156 * 10 8 2 32 32 H 1.08998 * 109.47201 * 64.68046 * 10 8 2 33 33 H 0.97001 * 119.99795 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 8 2.0065 -0.6742 -1.1664 5 6 1.5645 -2.0284 -1.2790 6 6 2.0764 -2.8322 -0.0808 7 6 1.5756 -2.1813 1.2122 8 6 2.0405 -0.7222 1.2496 9 1 3.1297 -0.6874 1.2709 10 6 1.4812 -0.0394 2.4993 11 6 2.0744 -0.6778 3.7287 12 1 2.7796 -1.4897 3.6287 13 6 1.7169 -0.2254 4.9811 14 7 0.8579 0.7629 5.1028 15 14 2.4518 -1.0173 6.5050 16 1 3.9289 -0.8672 6.4776 17 1 1.9089 -0.3544 7.7180 18 1 2.1013 -2.4600 6.5311 19 1 -0.3634 0.5134 0.8903 20 1 -0.3634 0.5143 -0.8897 21 1 -0.3633 -1.0277 -0.0005 22 1 3.1304 1.4420 -0.0005 23 1 1.6769 1.9565 -0.8897 24 1 1.6777 1.9562 0.8903 25 1 1.9530 -2.4622 -2.2004 26 1 0.4749 -2.0549 -1.2958 27 1 3.1664 -2.8400 -0.0864 28 1 1.7036 -3.8547 -0.1420 29 1 0.4867 -2.2179 1.2408 30 1 1.9825 -2.7157 2.0706 31 1 1.7378 1.0198 2.4801 32 1 0.3970 -0.1503 2.5194 33 1 0.6062 1.0809 5.9839 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259582229.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:46 Heat of formation + Delta-G solvation = -90.625388 kcal Electronic energy + Delta-G solvation = -13549.291418 eV Core-core repulsion = 11380.293548 eV Total energy + Delta-G solvation = -2168.997869 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.02274 -36.22209 -34.33473 -34.20582 -30.57211 -28.34210 -27.88080 -25.73700 -23.14760 -22.43382 -19.59486 -18.65256 -16.90383 -16.79174 -16.38565 -15.81473 -15.30006 -14.90559 -14.12725 -14.04356 -13.75720 -13.46513 -13.25045 -12.91577 -12.84576 -12.68728 -12.48802 -12.26104 -12.02704 -11.85583 -11.64892 -11.29050 -10.94638 -10.75830 -10.46976 -10.06543 -8.16677 -6.25000 1.39072 1.40959 1.48714 2.41540 2.94295 3.16339 3.90578 3.96366 4.05661 4.11586 4.23924 4.43517 4.58824 4.63266 4.72010 4.84896 4.90121 4.91614 5.00733 5.08781 5.14677 5.22953 5.26336 5.35192 5.39128 5.48971 5.61191 5.84430 5.89611 6.30355 6.46734 6.89938 7.42332 8.94368 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047274 B = 0.010557 C = 0.009404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.143479 B = 2651.541768 C = 2976.837138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.116 3.884 3 C -0.134 4.134 4 O -0.392 6.392 5 C 0.055 3.945 6 C -0.150 4.150 7 C -0.107 4.107 8 C -0.095 4.095 9 H 0.045 0.955 10 C 0.038 3.962 11 C -0.533 4.533 12 H 0.054 0.946 13 C 0.003 3.997 14 N -0.931 5.931 15 Si 0.955 3.045 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.269 1.269 19 H 0.055 0.945 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.055 0.945 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.113 0.887 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.051 0.949 31 H -0.002 1.002 32 H 0.000 1.000 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.315 -4.622 -10.634 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.077 3.923 3 C -0.191 4.191 4 O -0.312 6.312 5 C -0.021 4.021 6 C -0.187 4.187 7 C -0.145 4.145 8 C -0.114 4.114 9 H 0.064 0.936 10 C 0.001 3.999 11 C -0.571 4.571 12 H 0.072 0.928 13 C -0.195 4.195 14 N -0.571 5.571 15 Si 0.781 3.219 16 H -0.196 1.196 17 H -0.209 1.209 18 H -0.194 1.194 19 H 0.074 0.926 20 H 0.090 0.910 21 H 0.083 0.917 22 H 0.074 0.926 23 H 0.092 0.908 24 H 0.082 0.918 25 H 0.131 0.869 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.017 0.983 32 H 0.019 0.981 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.345 -4.428 -10.644 11.534 hybrid contribution 0.119 -0.257 1.455 1.483 sum 0.464 -4.685 -9.189 10.324 Atomic orbital electron populations 1.22377 0.95429 1.02609 1.02317 1.21463 0.93492 0.92746 0.84616 1.21755 1.01348 0.93718 1.02307 1.87863 1.74404 1.25643 1.43289 1.22738 0.99229 0.81534 0.98638 1.22204 1.01350 1.00257 0.94912 1.21534 1.00179 0.95229 0.97559 1.21635 0.98840 0.95924 0.94964 0.93631 1.19053 0.94910 0.94536 0.91410 1.21614 1.25441 1.17763 0.92255 0.92771 1.25854 0.95668 0.95668 1.02315 1.70070 1.34593 1.28202 1.24251 0.85649 0.78866 0.78844 0.78590 1.19553 1.20902 1.19366 0.92561 0.91007 0.91745 0.92620 0.90803 0.91831 0.86948 0.92407 0.91979 0.89193 0.92615 0.93011 0.98334 0.98134 0.92938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.71 7.52 71.98 0.54 -5.17 16 2 C 0.12 4.19 0.88 -10.77 -0.01 4.18 16 3 C -0.13 -4.68 8.56 71.98 0.62 -4.06 16 4 O -0.39 -13.14 10.24 -148.98 -1.53 -14.67 16 5 C 0.05 1.47 6.52 72.01 0.47 1.94 16 6 C -0.15 -4.31 6.14 30.69 0.19 -4.12 16 7 C -0.11 -4.04 4.76 30.71 0.15 -3.89 16 8 C -0.09 -4.00 1.62 -10.70 -0.02 -4.02 16 9 H 0.05 2.04 8.14 -2.39 -0.02 2.03 16 10 C 0.04 1.96 3.71 29.85 0.11 2.07 16 11 C -0.53 -30.15 8.45 25.60 0.22 -29.93 16 12 H 0.05 2.99 7.06 -2.91 -0.02 2.97 16 13 C 0.00 0.15 5.46 84.66 0.46 0.61 16 14 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 15 Si 0.96 44.54 29.54 68.60 2.03 46.56 16 16 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 17 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 18 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 19 H 0.06 2.12 6.50 -2.38 -0.02 2.11 16 20 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 21 H 0.06 2.04 4.97 -2.39 -0.01 2.03 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 24 H 0.06 2.41 6.40 -2.38 -0.02 2.40 16 25 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 1.45 6.34 -2.39 -0.02 1.44 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 29 H 0.06 2.08 6.62 -2.39 -0.02 2.07 16 30 H 0.05 2.11 7.06 -2.39 -0.02 2.10 16 31 H 0.00 -0.09 6.28 -2.38 -0.01 -0.10 16 32 H 0.00 0.02 6.66 -2.39 -0.02 0.00 16 33 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -62.56 251.17 4.58 -57.98 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.07 Total: 8.49 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 2.72 Total: -42.39 kcal Atomic # 7 Polarization: -56.26 SS G_CDS: 0.28 Total: -55.98 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -1.53 Total: -14.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Total: -62.56 4.58 -57.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259582229.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.646 kcal (2) G-P(sol) polarization free energy of solvation -62.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds