Wall clock time and date at job start Mon Mar 30 2020 01:52:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47486 * 2 1 4 4 C 1.53002 * 109.46969 * 119.99934 * 2 1 3 5 5 C 1.53002 * 109.47454 * 59.99949 * 4 2 1 6 6 C 1.52997 * 109.46978 * 59.99922 * 5 4 2 7 7 H 1.09000 * 109.47140 * 180.02562 * 6 5 4 8 8 O 1.42905 * 109.46921 * 60.00106 * 6 5 4 9 9 C 1.52999 * 109.47269 * 300.00621 * 6 5 4 10 10 H 1.09002 * 109.46716 * 299.99747 * 9 6 5 11 11 C 1.50701 * 109.47274 * 179.97438 * 9 6 5 12 12 H 1.07993 * 120.00098 * 239.99588 * 11 9 6 13 13 C 1.37880 * 119.99861 * 59.99375 * 11 9 6 14 14 N 1.31516 * 119.99888 * 0.02562 * 13 11 9 15 15 Si 1.86805 * 119.99914 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47094 * 90.00226 * 15 13 11 17 17 H 1.48498 * 109.47121 * 210.00323 * 15 13 11 18 18 H 1.48505 * 109.46998 * 330.00223 * 15 13 11 19 19 C 1.52995 * 109.47577 * 239.99482 * 2 1 3 20 20 H 1.09004 * 109.47298 * 300.00287 * 1 2 3 21 21 H 1.09001 * 109.46997 * 60.00430 * 1 2 3 22 22 H 1.09000 * 109.47054 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47514 * 179.97438 * 3 2 1 24 24 H 1.09001 * 109.46652 * 299.99782 * 3 2 1 25 25 H 1.09004 * 109.47086 * 59.99583 * 3 2 1 26 26 H 1.09004 * 109.46930 * 300.00004 * 4 2 1 27 27 H 1.09002 * 109.47067 * 180.02562 * 4 2 1 28 28 H 1.09001 * 109.46380 * 300.00332 * 5 4 2 29 29 H 1.09001 * 109.47142 * 180.02562 * 5 4 2 30 30 H 0.96696 * 114.00036 * 60.00010 * 8 6 5 31 31 H 0.97000 * 119.99438 * 180.02562 * 14 13 11 32 32 H 1.09001 * 109.46885 * 60.00019 * 19 2 1 33 33 H 1.09002 * 109.47457 * 180.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.5299 -2.1638 1.2494 6 6 2.0399 -2.8850 0.0002 7 1 1.6763 -3.9126 0.0000 8 8 3.4690 -2.8850 0.0002 9 6 1.5301 -2.1638 -1.2491 10 1 0.4401 -2.1638 -1.2491 11 6 2.0329 -2.8739 -2.4795 12 1 2.6538 -2.3487 -3.1902 13 6 1.7004 -4.1940 -2.6979 14 7 0.9439 -4.8334 -1.8327 15 14 2.3243 -5.0744 -4.2228 16 1 3.6324 -5.7116 -3.9261 17 1 1.3467 -6.1164 -4.6276 18 1 2.4897 -4.0952 -5.3269 19 6 2.0401 -0.7213 -1.2491 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6767 1.9562 -0.8900 25 1 1.6767 1.9564 0.8900 26 1 1.6766 -0.2074 2.1393 27 1 3.1299 -0.7209 1.2495 28 1 0.4399 -2.1636 1.2493 29 1 1.8929 -2.6774 2.1396 30 1 3.8623 -3.3267 0.7653 31 1 0.7103 -5.7622 -1.9862 32 1 1.6767 -0.2075 -2.1391 33 1 3.1301 -0.7217 -1.2489 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259625619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:13 Heat of formation + Delta-G solvation = -98.334511 kcal Electronic energy + Delta-G solvation = -13779.535842 eV Core-core repulsion = 11610.203680 eV Total energy + Delta-G solvation = -2169.332162 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50217 -36.72934 -34.99707 -32.12544 -31.63627 -28.08117 -26.88531 -26.47497 -22.96667 -21.55121 -19.23217 -18.27105 -17.24221 -16.58975 -15.87218 -15.64113 -14.97597 -14.80538 -14.31818 -14.02772 -13.48316 -13.03570 -12.94677 -12.79375 -12.59096 -12.50206 -12.40582 -12.26997 -11.85736 -11.58629 -11.50081 -11.01841 -10.82922 -10.57565 -10.32845 -10.04038 -8.04926 -6.14803 1.38648 1.40044 1.49357 2.45033 3.21634 3.88259 3.96083 4.08828 4.18581 4.45821 4.57417 4.69203 4.82581 4.89939 4.91030 5.01185 5.04642 5.12308 5.14535 5.18779 5.28000 5.31656 5.46088 5.53061 5.60592 5.68308 5.77015 5.99193 6.11791 6.42973 6.89595 7.35680 7.50767 8.98244 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.047609 B = 0.012051 C = 0.011308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.987816 B = 2322.968466 C = 2475.488751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.068 4.068 3 C -0.132 4.132 4 C -0.090 4.090 5 C -0.148 4.148 6 C 0.110 3.890 7 H 0.046 0.954 8 O -0.571 6.571 9 C 0.051 3.949 10 H 0.015 0.985 11 C -0.515 4.515 12 H 0.039 0.961 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.948 3.052 16 H -0.280 1.280 17 H -0.281 1.281 18 H -0.272 1.272 19 C -0.083 4.083 20 H 0.069 0.931 21 H 0.048 0.952 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.364 0.636 31 H 0.259 0.741 32 H 0.033 0.967 33 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.712 7.534 6.584 10.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.189 4.189 4 C -0.128 4.128 5 C -0.186 4.186 6 C 0.051 3.949 7 H 0.064 0.936 8 O -0.375 6.375 9 C 0.033 3.967 10 H 0.033 0.967 11 C -0.553 4.553 12 H 0.057 0.943 13 C -0.184 4.184 14 N -0.561 5.561 15 Si 0.774 3.226 16 H -0.206 1.206 17 H -0.206 1.206 18 H -0.197 1.197 19 C -0.121 4.121 20 H 0.088 0.912 21 H 0.067 0.933 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.209 0.791 31 H 0.068 0.932 32 H 0.052 0.948 33 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.524 7.703 6.028 9.796 hybrid contribution 0.307 -1.266 -0.501 1.396 sum 0.832 6.437 5.527 8.525 Atomic orbital electron populations 1.21898 0.94884 1.01202 1.01514 1.20589 0.95630 0.95546 0.95045 1.21789 1.00635 0.94466 1.01986 1.21396 1.00229 0.94242 0.96913 1.22289 1.00877 0.97370 0.98025 1.21823 0.79288 0.99118 0.94673 0.93579 1.86556 1.21245 1.80924 1.48820 1.18661 0.94308 0.91539 0.92182 0.96678 1.21462 1.30208 0.96771 1.06896 0.94288 1.25610 0.95434 0.98174 0.99196 1.69961 1.38407 1.10894 1.36866 0.85717 0.78037 0.78372 0.80463 1.20622 1.20647 1.19670 1.21431 0.98906 0.95847 0.95924 0.91234 0.93288 0.93890 0.93128 0.92883 0.91168 0.90833 0.92500 0.92099 0.91806 0.79116 0.93220 0.94814 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 7.78 71.98 0.56 -3.90 16 2 C -0.07 -2.31 0.77 -52.18 -0.04 -2.35 16 3 C -0.13 -3.61 8.47 71.98 0.61 -3.00 16 4 C -0.09 -2.92 4.58 30.60 0.14 -2.78 16 5 C -0.15 -5.46 5.36 30.59 0.16 -5.30 16 6 C 0.11 5.18 2.99 30.59 0.09 5.27 16 7 H 0.05 2.52 6.07 -2.39 -0.01 2.50 16 8 O -0.57 -26.10 11.59 -148.98 -1.73 -27.83 16 9 C 0.05 2.63 1.66 -11.54 -0.02 2.61 16 10 H 0.02 0.84 6.43 -2.39 -0.02 0.83 16 11 C -0.52 -29.89 8.21 25.60 0.21 -29.68 16 12 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 13 C 0.01 0.76 5.30 84.66 0.45 1.21 16 14 N -0.92 -54.04 11.32 21.45 0.24 -53.79 16 15 Si 0.95 45.68 29.54 68.60 2.03 47.71 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 19 C -0.08 -3.64 3.80 30.59 0.12 -3.53 16 20 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 21 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 22 H 0.04 1.59 4.81 -2.39 -0.01 1.58 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 25 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 26 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.06 1.89 7.68 -2.39 -0.02 1.87 16 28 H 0.06 2.28 6.43 -2.39 -0.02 2.26 16 29 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.36 13.03 9.08 -74.06 -0.67 12.36 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.04 1.79 7.68 -2.39 -0.02 1.78 16 Total: -1.00 -63.48 252.08 3.23 -60.25 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: 0.41 Total: 15.11 kcal Atomic # 6 Polarization: -43.73 SS G_CDS: 2.28 Total: -41.45 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.24 Total: -53.79 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.73 Total: -27.83 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -63.48 3.23 -60.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259625619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.081 kcal (2) G-P(sol) polarization free energy of solvation -63.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds