Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46890 * 299.99597 * 6 5 4 9 9 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 10 10 H 1.09001 * 109.47375 * 59.99966 * 9 6 5 11 11 C 1.50696 * 109.46910 * 180.02562 * 9 6 5 12 12 H 1.08000 * 120.00290 * 120.00105 * 11 9 6 13 13 C 1.37882 * 120.00176 * 299.99973 * 11 9 6 14 14 N 1.31514 * 120.00218 * 180.02562 * 13 11 9 15 15 Si 1.86804 * 119.99636 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46755 * 90.00529 * 15 13 11 17 17 H 1.48502 * 109.46971 * 209.99998 * 15 13 11 18 18 H 1.48495 * 109.47345 * 330.00337 * 15 13 11 19 19 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 20 20 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 21 21 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 22 22 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 25 25 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 26 26 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 29 29 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 30 30 H 0.96702 * 114.00303 * 300.00518 * 8 6 5 31 31 H 0.96999 * 119.99896 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47554 * 299.99692 * 19 2 1 33 33 H 1.09004 * 109.47108 * 59.99942 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 1 5.1705 -1.4408 0.0004 8 8 3.6047 -2.7890 0.0001 9 6 3.5705 -0.7203 -1.2489 10 1 3.9334 0.3075 -1.2486 11 6 4.0729 -1.4307 -2.4792 12 1 3.3712 -1.8412 -3.1902 13 6 5.4285 -1.5567 -2.6974 14 7 5.8669 -2.1762 -3.7715 15 14 6.6423 -0.8461 -1.4681 16 1 6.9641 -1.8700 -0.4419 17 1 7.8855 -0.4459 -2.1748 18 1 6.0423 0.3424 -0.8104 19 6 2.0400 -0.7212 -1.2492 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6765 -0.2074 2.1393 27 1 1.6767 -1.7489 1.2493 28 1 3.9330 0.3071 1.2498 29 1 3.9333 -1.2348 2.1394 30 1 3.8900 -3.3070 0.7652 31 1 6.8206 -2.2645 -3.9251 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259627805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = -69.463220 kcal Electronic energy + Delta-G solvation = -13869.586066 eV Core-core repulsion = 11701.505857 eV Total energy + Delta-G solvation = -2168.080209 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.21411 -35.38652 -32.90622 -30.92468 -30.24995 -26.90201 -25.67179 -24.57128 -21.36482 -20.00028 -17.90826 -16.61569 -16.01323 -14.99408 -14.39148 -13.93069 -13.63919 -13.36504 -12.97104 -12.54617 -12.14028 -11.87296 -11.54250 -11.27665 -11.13059 -11.01807 -10.65824 -10.60469 -10.42973 -10.05615 -9.70890 -9.46245 -9.39196 -8.80376 -8.56246 -8.39614 -5.97627 -3.92712 3.26243 3.34516 3.38564 4.45107 5.11836 5.17496 5.28990 5.36295 5.43276 5.66318 5.76628 5.91568 5.99889 6.05033 6.16241 6.22390 6.23260 6.30718 6.38596 6.47016 6.49314 6.62270 6.67981 6.83300 6.92946 7.09693 7.33077 7.54688 7.84704 8.55222 8.69484 9.08036 9.64812 11.16858 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043507 B = 0.014040 C = 0.013328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.416653 B = 1993.799388 C = 2100.287205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.071 4.071 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.159 4.159 6 C 0.103 3.897 7 H 0.032 0.968 8 O -0.538 6.538 9 C 0.020 3.980 10 H 0.039 0.961 11 C -0.491 4.491 12 H 0.073 0.927 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.282 1.282 17 H -0.296 1.296 18 H -0.268 1.268 19 C -0.082 4.082 20 H 0.044 0.956 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.350 0.650 31 H 0.261 0.739 32 H 0.062 0.938 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 4.454 10.594 13.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.071 4.071 3 C -0.200 4.200 4 C -0.132 4.132 5 C -0.197 4.197 6 C 0.044 3.956 7 H 0.049 0.951 8 O -0.340 6.340 9 C 0.001 3.999 10 H 0.057 0.943 11 C -0.529 4.529 12 H 0.091 0.909 13 C -0.133 4.133 14 N -0.544 5.544 15 Si 0.711 3.289 16 H -0.209 1.209 17 H -0.224 1.224 18 H -0.193 1.193 19 C -0.120 4.120 20 H 0.064 0.936 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.193 0.807 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.227 4.612 9.909 12.579 hybrid contribution 1.198 0.109 1.245 1.731 sum -5.029 4.721 11.154 13.115 Atomic orbital electron populations 1.21834 0.95607 1.01238 1.00709 1.20633 0.94329 0.95334 0.96781 1.21957 1.01802 0.95743 1.00464 1.21398 0.94917 1.00490 0.96408 1.22406 0.97009 1.01424 0.98822 1.22310 0.95342 0.82512 0.95472 0.95059 1.86717 1.76614 1.23291 1.47380 1.19231 0.92944 0.95275 0.92404 0.94301 1.20957 0.92293 1.34880 1.04790 0.90908 1.24986 0.98217 0.94979 0.95102 1.69891 1.14141 1.43406 1.26952 0.86966 0.80908 0.79707 0.81278 1.20895 1.22381 1.19282 1.21404 0.96831 0.99510 0.94218 0.93643 0.92998 0.92951 0.91990 0.92977 0.93885 0.93442 0.91662 0.91597 0.93226 0.80688 0.92905 0.91909 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 8.47 37.16 0.31 -1.63 16 2 C -0.07 -1.18 0.77 -154.51 -0.12 -1.30 16 3 C -0.14 -2.24 7.78 37.16 0.29 -1.95 16 4 C -0.09 -1.52 4.59 -26.73 -0.12 -1.64 16 5 C -0.16 -2.77 5.36 -26.73 -0.14 -2.91 16 6 C 0.10 2.23 2.70 -26.73 -0.07 2.16 16 7 H 0.03 0.74 3.27 -51.93 -0.17 0.57 16 8 O -0.54 -11.62 11.59 -35.23 -0.41 -12.03 16 9 C 0.02 0.48 1.26 -91.75 -0.12 0.36 16 10 H 0.04 0.94 5.49 -51.93 -0.28 0.65 16 11 C -0.49 -14.22 8.79 -34.44 -0.30 -14.52 16 12 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 13 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 14 N -0.90 -28.49 13.96 55.43 0.77 -27.72 16 15 Si 0.88 22.27 24.37 -169.99 -4.14 18.13 16 16 H -0.28 -6.96 6.87 56.52 0.39 -6.57 16 17 H -0.30 -7.50 7.11 56.52 0.40 -7.10 16 18 H -0.27 -6.36 6.53 56.52 0.37 -5.99 16 19 C -0.08 -1.70 3.81 -26.71 -0.10 -1.81 16 20 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 1.06 4.81 -51.93 -0.25 0.81 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.06 1.07 7.68 -51.93 -0.40 0.67 16 28 H 0.07 1.13 6.43 -51.93 -0.33 0.79 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.35 5.81 9.08 45.56 0.41 6.23 16 31 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.06 1.39 7.68 -51.93 -0.40 0.99 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 245.26 15.07 3.70 3.70 Total: -1.00 -31.49 245.26 -4.96 -36.45 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.40 Total: 2.80 kcal Atomic # 6 Polarization: -20.86 SS G_CDS: -0.47 Total: -21.33 kcal Atomic # 7 Polarization: -28.49 SS G_CDS: 0.77 Total: -27.72 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -0.41 Total: -12.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.14 Total: 18.13 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -31.49 -4.96 -36.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.013 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds