Wall clock time and date at job start Mon Mar 30 2020 01:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46637 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99695 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 7 7 H 1.09000 * 109.47050 * 179.97438 * 6 5 4 8 8 O 1.42896 * 109.46890 * 299.99597 * 6 5 4 9 9 C 1.52997 * 109.47164 * 59.99836 * 6 5 4 10 10 H 1.09001 * 109.47375 * 59.99966 * 9 6 5 11 11 C 1.50696 * 109.46910 * 180.02562 * 9 6 5 12 12 H 1.08000 * 120.00290 * 120.00105 * 11 9 6 13 13 C 1.37882 * 120.00176 * 299.99973 * 11 9 6 14 14 N 1.31514 * 120.00218 * 180.02562 * 13 11 9 15 15 Si 1.86804 * 119.99636 * 359.97438 * 13 11 9 16 16 H 1.48499 * 109.46755 * 90.00529 * 15 13 11 17 17 H 1.48502 * 109.46971 * 209.99998 * 15 13 11 18 18 H 1.48495 * 109.47345 * 330.00337 * 15 13 11 19 19 C 1.52996 * 109.47302 * 239.99912 * 2 1 3 20 20 H 1.09002 * 109.47508 * 299.99876 * 1 2 3 21 21 H 1.09000 * 109.47437 * 60.00474 * 1 2 3 22 22 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46986 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47662 * 299.99908 * 3 2 1 25 25 H 1.09002 * 109.47075 * 60.00414 * 3 2 1 26 26 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 27 27 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 28 28 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 29 29 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 30 30 H 0.96702 * 114.00303 * 300.00518 * 8 6 5 31 31 H 0.96999 * 119.99896 * 179.97438 * 14 13 11 32 32 H 1.08992 * 109.47554 * 299.99692 * 19 2 1 33 33 H 1.09004 * 109.47108 * 59.99942 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 6 4.0805 -1.4415 0.0004 7 1 5.1705 -1.4408 0.0004 8 8 3.6047 -2.7890 0.0001 9 6 3.5705 -0.7203 -1.2489 10 1 3.9334 0.3075 -1.2486 11 6 4.0729 -1.4307 -2.4792 12 1 3.3712 -1.8412 -3.1902 13 6 5.4285 -1.5567 -2.6974 14 7 5.8669 -2.1762 -3.7715 15 14 6.6423 -0.8461 -1.4681 16 1 6.9641 -1.8700 -0.4419 17 1 7.8855 -0.4459 -2.1748 18 1 6.0423 0.3424 -0.8104 19 6 2.0400 -0.7212 -1.2492 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6766 1.9563 0.8900 26 1 1.6765 -0.2074 2.1393 27 1 1.6767 -1.7489 1.2493 28 1 3.9330 0.3071 1.2498 29 1 3.9333 -1.2348 2.1394 30 1 3.8900 -3.3070 0.7652 31 1 6.8206 -2.2645 -3.9251 32 1 1.6768 -1.7489 -1.2492 33 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259627805.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:15 Heat of formation + Delta-G solvation = -92.724521 kcal Electronic energy + Delta-G solvation = -13870.594752 eV Core-core repulsion = 11701.505857 eV Total energy + Delta-G solvation = -2169.088895 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.72885 -36.92599 -35.01716 -32.61540 -31.89392 -28.09208 -27.26604 -26.41017 -22.92285 -21.73207 -19.51869 -18.54687 -17.77060 -16.70707 -15.81841 -15.67148 -15.18793 -14.92365 -14.52482 -14.36380 -13.80819 -13.15827 -13.01019 -12.75560 -12.57944 -12.55023 -12.34699 -12.14731 -12.07619 -11.59385 -11.54892 -11.07998 -11.00741 -10.81377 -10.44331 -10.19716 -8.26716 -6.27232 1.24531 1.30728 1.40937 2.31467 3.08567 3.63914 3.87824 3.99991 4.03470 4.26676 4.39417 4.56016 4.60500 4.71505 4.83593 4.87778 4.94074 5.03271 5.06837 5.09640 5.14778 5.28467 5.29354 5.40165 5.49218 5.62393 5.64884 5.76016 5.82295 6.35920 6.74495 7.18442 7.34543 8.91790 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.043507 B = 0.014040 C = 0.013328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.416653 B = 1993.799388 C = 2100.287205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.092 4.092 5 C -0.152 4.152 6 C 0.100 3.900 7 H 0.017 0.983 8 O -0.562 6.562 9 C 0.017 3.983 10 H 0.041 0.959 11 C -0.500 4.500 12 H 0.020 0.980 13 C 0.004 3.996 14 N -0.958 5.958 15 Si 0.949 3.051 16 H -0.269 1.269 17 H -0.298 1.298 18 H -0.240 1.240 19 C -0.077 4.077 20 H 0.073 0.927 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.372 0.628 31 H 0.263 0.737 32 H 0.038 0.962 33 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 6.036 14.026 16.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.069 4.069 3 C -0.199 4.199 4 C -0.129 4.129 5 C -0.190 4.190 6 C 0.042 3.958 7 H 0.034 0.966 8 O -0.367 6.367 9 C -0.002 4.002 10 H 0.059 0.941 11 C -0.538 4.538 12 H 0.038 0.962 13 C -0.191 4.191 14 N -0.599 5.599 15 Si 0.775 3.225 16 H -0.195 1.195 17 H -0.225 1.225 18 H -0.163 1.163 19 C -0.115 4.115 20 H 0.092 0.908 21 H 0.070 0.930 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.219 0.781 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -6.602 6.194 13.368 16.145 hybrid contribution 1.225 -0.462 0.061 1.310 sum -5.378 5.733 13.429 15.561 Atomic orbital electron populations 1.21791 0.93568 1.01535 1.02108 1.20620 0.96019 0.95550 0.94722 1.21944 1.00873 0.95076 1.01974 1.21411 0.93897 1.00520 0.97093 1.22339 0.97934 1.01483 0.97218 1.22154 0.94416 0.82861 0.96407 0.96564 1.86666 1.76863 1.23881 1.49300 1.19205 0.94892 0.94740 0.91362 0.94112 1.21297 0.91779 1.34651 1.06089 0.96169 1.25926 1.00465 0.95481 0.97251 1.70074 1.14671 1.45646 1.29528 0.85849 0.77744 0.80107 0.78764 1.19505 1.22536 1.16336 1.21308 0.94973 0.98701 0.96492 0.90818 0.93044 0.93289 0.93385 0.93192 0.90747 0.89936 0.92286 0.90702 0.90281 0.78127 0.92858 0.94295 0.94601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.47 71.98 0.61 -2.75 16 2 C -0.07 -2.11 0.77 -52.18 -0.04 -2.15 16 3 C -0.14 -3.94 7.78 71.98 0.56 -3.38 16 4 C -0.09 -2.54 4.59 30.59 0.14 -2.40 16 5 C -0.15 -4.64 5.36 30.60 0.16 -4.48 16 6 C 0.10 4.16 2.70 30.60 0.08 4.24 16 7 H 0.02 0.74 3.27 -2.39 -0.01 0.73 16 8 O -0.56 -23.71 11.59 -148.98 -1.73 -25.43 16 9 C 0.02 0.79 1.26 -11.53 -0.01 0.77 16 10 H 0.04 1.92 5.49 -2.39 -0.01 1.91 16 11 C -0.50 -30.17 8.79 25.60 0.22 -29.94 16 12 H 0.02 1.37 7.99 -2.91 -0.02 1.35 16 13 C 0.00 0.24 5.45 84.66 0.46 0.71 16 14 N -0.96 -62.83 13.96 21.45 0.30 -62.53 16 15 Si 0.95 45.99 24.37 68.60 1.67 47.66 16 16 H -0.27 -12.39 6.87 99.48 0.68 -11.70 16 17 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 18 H -0.24 -10.43 6.53 99.48 0.65 -9.78 16 19 C -0.08 -3.21 3.81 30.61 0.12 -3.10 16 20 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 22 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 23 H 0.05 1.47 4.81 -2.39 -0.01 1.46 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.06 1.73 7.68 -2.39 -0.02 1.71 16 28 H 0.07 2.18 6.43 -2.39 -0.02 2.17 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.37 11.61 9.08 -74.06 -0.67 10.94 16 31 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 32 H 0.04 1.76 7.68 -2.39 -0.02 1.75 16 33 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 Total: -1.00 -71.27 245.26 2.88 -68.39 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: 0.33 Total: 14.39 kcal Atomic # 6 Polarization: -44.78 SS G_CDS: 2.30 Total: -42.48 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.30 Total: -62.53 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -1.73 Total: -25.43 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 1.67 Total: 47.66 kcal Total: -71.27 2.88 -68.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627805.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.336 kcal (2) G-P(sol) polarization free energy of solvation -71.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds