Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 C 1.52997 * 109.47419 * 239.99855 * 2 1 3 5 5 C 1.53004 * 109.47122 * 300.00107 * 4 2 1 6 6 C 1.53002 * 109.47019 * 299.99573 * 5 4 2 7 7 H 1.08996 * 109.47170 * 300.00009 * 6 5 4 8 8 O 1.42897 * 109.47100 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.46826 * 60.00316 * 6 5 4 10 10 H 1.08996 * 109.47497 * 59.99893 * 9 6 5 11 11 C 1.50698 * 109.46892 * 180.02562 * 9 6 5 12 12 H 1.07998 * 120.00225 * 35.06026 * 11 9 6 13 13 C 1.37876 * 119.99980 * 215.06021 * 11 9 6 14 14 N 1.31517 * 119.99864 * 5.11989 * 13 11 9 15 15 Si 1.86797 * 120.00338 * 185.12234 * 13 11 9 16 16 H 1.48507 * 109.46849 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47247 * 119.99460 * 15 13 11 18 18 H 1.48495 * 109.47439 * 239.99806 * 15 13 11 19 19 C 1.53002 * 109.47286 * 119.99937 * 2 1 3 20 20 H 1.09002 * 109.47092 * 299.99971 * 1 2 3 21 21 H 1.09000 * 109.47385 * 60.00432 * 1 2 3 22 22 H 1.09006 * 109.46969 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46688 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47066 * 299.99762 * 3 2 1 25 25 H 1.08992 * 109.47226 * 60.00110 * 3 2 1 26 26 H 1.08996 * 109.47439 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47077 * 59.99523 * 4 2 1 28 28 H 1.09002 * 109.47143 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47157 * 59.99590 * 5 4 2 30 30 H 0.96706 * 113.99504 * 60.00624 * 8 6 5 31 31 H 0.97002 * 120.00200 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47130 * 300.00069 * 19 2 1 33 33 H 1.08996 * 109.47170 * 180.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 1 3.1300 -2.8850 0.0001 8 8 1.5633 -4.2321 0.0004 9 6 1.5299 -2.1637 1.2493 10 1 0.4400 -2.1638 1.2493 11 6 2.0328 -2.8737 2.4798 12 1 3.0126 -3.3281 2.4786 13 6 1.2421 -2.9433 3.6071 14 7 0.0118 -2.4793 3.5770 15 14 1.9181 -3.6964 5.1772 16 1 3.3168 -4.1409 4.9506 17 1 1.8896 -2.6846 6.2637 18 1 1.0852 -4.8630 5.5652 19 6 2.0400 -0.7212 1.2492 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.1300 -0.7209 -1.2494 27 1 1.6766 -0.2075 -2.1392 28 1 1.8930 -2.6775 -2.1394 29 1 0.4400 -2.1638 -1.2492 30 1 1.8484 -4.7504 -0.7647 31 1 -0.5444 -2.5279 4.3702 32 1 1.6766 -0.2074 2.1393 33 1 3.1299 -0.7208 1.2495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259627810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = -81.678593 kcal Electronic energy + Delta-G solvation = -13647.266623 eV Core-core repulsion = 11478.656716 eV Total energy + Delta-G solvation = -2168.609907 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.87013 -35.44375 -32.92115 -30.84163 -29.68829 -26.70639 -25.02888 -24.56334 -21.54753 -19.79029 -17.64595 -16.30486 -16.15545 -14.69800 -14.10952 -13.96344 -13.47401 -13.12137 -12.81682 -12.27800 -12.02123 -11.45559 -11.29515 -11.08068 -10.96587 -10.89749 -10.71640 -10.33841 -10.28340 -10.05287 -9.80642 -9.53908 -9.13157 -8.61169 -8.48352 -8.27985 -5.88629 -3.87623 3.37221 3.44777 3.49247 4.54648 5.16883 5.29487 5.44440 5.47057 5.68441 5.79542 5.88355 6.06588 6.16806 6.21434 6.28215 6.35618 6.40391 6.43434 6.49460 6.72638 6.80935 6.86547 6.94814 7.03808 7.15205 7.36373 7.67527 7.96428 8.08253 8.52126 8.74821 9.19793 9.73025 11.21499 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.012993 C = 0.011070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.407396 B = 2154.418310 C = 2528.656662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.098 4.098 5 C -0.154 4.154 6 C 0.112 3.888 7 H 0.031 0.969 8 O -0.548 6.548 9 C 0.040 3.960 10 H 0.071 0.929 11 C -0.495 4.495 12 H 0.050 0.950 13 C 0.063 3.937 14 N -0.894 5.894 15 Si 0.887 3.113 16 H -0.274 1.274 17 H -0.286 1.286 18 H -0.286 1.286 19 C -0.087 4.087 20 H 0.052 0.948 21 H 0.036 0.964 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.043 0.957 25 H 0.051 0.949 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.347 0.653 31 H 0.258 0.742 32 H 0.058 0.942 33 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 4.020 -8.249 9.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.072 4.072 3 C -0.194 4.194 4 C -0.136 4.136 5 C -0.191 4.191 6 C 0.053 3.947 7 H 0.049 0.951 8 O -0.350 6.350 9 C 0.022 3.978 10 H 0.089 0.911 11 C -0.533 4.533 12 H 0.068 0.932 13 C -0.138 4.138 14 N -0.534 5.534 15 Si 0.715 3.285 16 H -0.199 1.199 17 H -0.212 1.212 18 H -0.212 1.212 19 C -0.125 4.125 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.086 0.914 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.190 0.810 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 2.344 4.251 -7.550 8.976 hybrid contribution 0.621 -0.543 0.334 0.890 sum 2.965 3.708 -7.216 8.638 Atomic orbital electron populations 1.21882 0.94961 1.02518 0.99993 1.20690 0.95769 0.94216 0.96564 1.21852 1.00337 0.96543 1.00718 1.21450 0.99805 0.95177 0.97122 1.22389 1.01933 0.96294 0.98517 1.22098 0.95450 0.81407 0.95720 0.95111 1.86809 1.77164 1.23960 1.47021 1.18877 0.99577 0.89275 0.90095 0.91102 1.21001 1.01565 1.34035 0.96693 0.93213 1.24919 0.94658 0.95352 0.98836 1.69938 1.07028 1.47684 1.28707 0.86622 0.79148 0.78878 0.83814 1.19903 1.21212 1.21182 1.21707 0.98506 0.97806 0.94527 0.92930 0.94513 0.91434 0.93322 0.93784 0.92961 0.92724 0.93159 0.93708 0.91379 0.80984 0.93270 0.92286 0.94218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 7.78 37.15 0.29 -2.21 16 2 C -0.07 -1.30 0.77 -154.51 -0.12 -1.42 16 3 C -0.14 -2.11 8.47 37.16 0.31 -1.80 16 4 C -0.10 -1.61 4.73 -26.73 -0.13 -1.74 16 5 C -0.15 -2.73 5.27 -26.73 -0.14 -2.87 16 6 C 0.11 2.43 2.89 -26.73 -0.08 2.35 16 7 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 8 O -0.55 -12.22 12.94 -35.23 -0.46 -12.67 16 9 C 0.04 1.01 1.73 -91.77 -0.16 0.85 16 10 H 0.07 2.00 5.53 -51.93 -0.29 1.71 16 11 C -0.49 -14.09 7.95 -34.44 -0.27 -14.37 16 12 H 0.05 1.43 7.82 -52.49 -0.41 1.02 16 13 C 0.06 1.82 5.45 -17.82 -0.10 1.73 16 14 N -0.89 -26.73 12.77 55.43 0.71 -26.02 16 15 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 16 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 C -0.09 -1.93 3.99 -26.73 -0.11 -2.03 16 20 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 1.37 4.81 -51.93 -0.25 1.12 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.27 6.43 -51.93 -0.33 0.93 16 30 H 0.35 5.69 9.08 45.56 0.41 6.10 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 257.15 15.07 3.88 3.88 Total: -1.00 -30.73 257.15 -6.04 -36.78 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.65 Total: 2.37 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -0.50 Total: -21.51 kcal Atomic # 7 Polarization: -26.73 SS G_CDS: 0.71 Total: -26.02 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.46 Total: -12.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.73 -6.04 -36.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.902 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds