Wall clock time and date at job start Mon Mar 30 2020 01:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47061 * 2 1 4 4 C 1.52997 * 109.47419 * 239.99855 * 2 1 3 5 5 C 1.53004 * 109.47122 * 300.00107 * 4 2 1 6 6 C 1.53002 * 109.47019 * 299.99573 * 5 4 2 7 7 H 1.08996 * 109.47170 * 300.00009 * 6 5 4 8 8 O 1.42897 * 109.47100 * 179.97438 * 6 5 4 9 9 C 1.53006 * 109.46826 * 60.00316 * 6 5 4 10 10 H 1.08996 * 109.47497 * 59.99893 * 9 6 5 11 11 C 1.50698 * 109.46892 * 180.02562 * 9 6 5 12 12 H 1.07998 * 120.00225 * 35.06026 * 11 9 6 13 13 C 1.37876 * 119.99980 * 215.06021 * 11 9 6 14 14 N 1.31517 * 119.99864 * 5.11989 * 13 11 9 15 15 Si 1.86797 * 120.00338 * 185.12234 * 13 11 9 16 16 H 1.48507 * 109.46849 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47247 * 119.99460 * 15 13 11 18 18 H 1.48495 * 109.47439 * 239.99806 * 15 13 11 19 19 C 1.53002 * 109.47286 * 119.99937 * 2 1 3 20 20 H 1.09002 * 109.47092 * 299.99971 * 1 2 3 21 21 H 1.09000 * 109.47385 * 60.00432 * 1 2 3 22 22 H 1.09006 * 109.46969 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.46688 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47066 * 299.99762 * 3 2 1 25 25 H 1.08992 * 109.47226 * 60.00110 * 3 2 1 26 26 H 1.08996 * 109.47439 * 179.97438 * 4 2 1 27 27 H 1.09000 * 109.47077 * 59.99523 * 4 2 1 28 28 H 1.09002 * 109.47143 * 179.97438 * 5 4 2 29 29 H 1.08996 * 109.47157 * 59.99590 * 5 4 2 30 30 H 0.96706 * 113.99504 * 60.00624 * 8 6 5 31 31 H 0.97002 * 120.00200 * 180.02562 * 14 13 11 32 32 H 1.09002 * 109.47130 * 300.00069 * 19 2 1 33 33 H 1.08996 * 109.47170 * 180.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 1 3.1300 -2.8850 0.0001 8 8 1.5633 -4.2321 0.0004 9 6 1.5299 -2.1637 1.2493 10 1 0.4400 -2.1638 1.2493 11 6 2.0328 -2.8737 2.4798 12 1 3.0126 -3.3281 2.4786 13 6 1.2421 -2.9433 3.6071 14 7 0.0118 -2.4793 3.5770 15 14 1.9181 -3.6964 5.1772 16 1 3.3168 -4.1409 4.9506 17 1 1.8896 -2.6846 6.2637 18 1 1.0852 -4.8630 5.5652 19 6 2.0400 -0.7212 1.2492 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.1299 1.4425 0.0005 24 1 1.6766 1.9563 -0.8900 25 1 1.6766 1.9563 0.8899 26 1 3.1300 -0.7209 -1.2494 27 1 1.6766 -0.2075 -2.1392 28 1 1.8930 -2.6775 -2.1394 29 1 0.4400 -2.1638 -1.2492 30 1 1.8484 -4.7504 -0.7647 31 1 -0.5444 -2.5279 4.3702 32 1 1.6766 -0.2074 2.1393 33 1 3.1299 -0.7208 1.2495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259627810.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:16 Heat of formation + Delta-G solvation = -102.692379 kcal Electronic energy + Delta-G solvation = -13648.177849 eV Core-core repulsion = 11478.656716 eV Total energy + Delta-G solvation = -2169.521133 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.45290 -37.08093 -35.00681 -32.40504 -31.50369 -28.10322 -26.88672 -26.27144 -23.17940 -21.52320 -19.23323 -18.34365 -17.89795 -16.67558 -15.74512 -15.46024 -15.08763 -14.74476 -14.42871 -13.84431 -13.66343 -13.03659 -12.91391 -12.87932 -12.64611 -12.53726 -12.44800 -12.15988 -11.93490 -11.77417 -11.34139 -11.10555 -10.94604 -10.52550 -10.37908 -10.23731 -8.08308 -6.13550 1.36917 1.38041 1.49783 2.44443 3.20874 3.69444 3.93586 4.03971 4.24481 4.36721 4.41600 4.60805 4.68675 4.86259 4.92307 4.93408 4.98228 5.06244 5.12252 5.18380 5.31079 5.33585 5.40926 5.45770 5.58247 5.70373 5.72331 5.91784 6.03395 6.42273 6.99593 7.29821 7.49842 9.01260 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.037554 B = 0.012993 C = 0.011070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.407396 B = 2154.418310 C = 2528.656662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.071 4.071 3 C -0.132 4.132 4 C -0.094 4.094 5 C -0.145 4.145 6 C 0.112 3.888 7 H 0.033 0.967 8 O -0.579 6.579 9 C 0.034 3.966 10 H 0.033 0.967 11 C -0.511 4.511 12 H 0.040 0.960 13 C 0.008 3.992 14 N -0.928 5.928 15 Si 0.948 3.052 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.284 1.284 19 C -0.079 4.079 20 H 0.033 0.967 21 H 0.069 0.931 22 H 0.039 0.961 23 H 0.058 0.942 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.373 0.627 31 H 0.258 0.742 32 H 0.024 0.976 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.870 4.652 -9.923 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.071 4.071 3 C -0.189 4.189 4 C -0.131 4.131 5 C -0.182 4.182 6 C 0.053 3.947 7 H 0.051 0.949 8 O -0.384 6.384 9 C 0.015 3.985 10 H 0.051 0.949 11 C -0.550 4.550 12 H 0.058 0.942 13 C -0.189 4.189 14 N -0.568 5.568 15 Si 0.774 3.226 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.210 1.210 19 C -0.117 4.117 20 H 0.052 0.948 21 H 0.088 0.912 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.090 0.910 25 H 0.062 0.938 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.220 0.780 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.451 4.876 -9.244 11.006 hybrid contribution 0.280 -0.789 0.841 1.187 sum 3.731 4.087 -8.403 10.061 Atomic orbital electron populations 1.21827 0.95489 1.00913 1.00691 1.20663 0.95319 0.95844 0.95288 1.21792 1.00991 0.94418 1.01728 1.21463 1.00534 0.94015 0.97132 1.22271 1.01162 0.97240 0.97549 1.21977 0.95357 0.81361 0.95986 0.94906 1.86729 1.77681 1.24809 1.49196 1.18851 0.97303 0.91342 0.90968 0.94906 1.21408 1.01123 1.33960 0.98468 0.94171 1.25694 0.94988 0.96211 1.02007 1.70072 1.08149 1.49174 1.29449 0.85658 0.78638 0.78136 0.80139 1.19230 1.20372 1.20966 1.21500 0.98335 0.96198 0.95673 0.94776 0.91168 0.94207 0.92279 0.90979 0.93805 0.91534 0.89843 0.90288 0.92596 0.78029 0.93332 0.95755 0.93991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 7.78 71.98 0.56 -4.19 16 2 C -0.07 -2.44 0.77 -52.18 -0.04 -2.48 16 3 C -0.13 -3.68 8.47 71.98 0.61 -3.07 16 4 C -0.09 -2.74 4.73 30.59 0.14 -2.59 16 5 C -0.14 -4.77 5.27 30.60 0.16 -4.60 16 6 C 0.11 4.76 2.89 30.60 0.09 4.85 16 7 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 8 O -0.58 -25.63 12.94 -148.98 -1.93 -27.56 16 9 C 0.03 1.75 1.73 -11.54 -0.02 1.73 16 10 H 0.03 1.93 5.53 -2.39 -0.01 1.92 16 11 C -0.51 -29.89 7.95 25.60 0.20 -29.69 16 12 H 0.04 2.35 7.82 -2.91 -0.02 2.33 16 13 C 0.01 0.48 5.45 84.65 0.46 0.95 16 14 N -0.93 -57.47 12.77 21.45 0.27 -57.19 16 15 Si 0.95 46.45 29.54 68.60 2.03 48.48 16 16 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 17 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 19 C -0.08 -3.52 3.99 30.60 0.12 -3.40 16 20 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.04 1.64 4.81 -2.38 -0.01 1.63 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.99 6.43 -2.39 -0.02 1.98 16 30 H 0.37 11.69 9.08 -74.05 -0.67 11.02 16 31 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 32 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -68.26 257.15 3.07 -65.20 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: 0.40 Total: 13.58 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 2.29 Total: -42.50 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: 0.27 Total: -57.19 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.93 Total: -27.56 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -68.26 3.07 -65.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627810.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.497 kcal (2) G-P(sol) polarization free energy of solvation -68.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds