Wall clock time and date at job start Mon Mar 30 2020 01:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.52998 * 109.46854 * 240.00496 * 2 1 3 5 5 C 1.53002 * 109.47197 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47040 * 59.99653 * 5 4 2 7 7 H 1.08996 * 109.47232 * 60.00136 * 6 5 4 8 8 O 1.42898 * 109.46920 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47100 * 300.00006 * 6 5 4 10 10 H 1.09000 * 109.47644 * 300.00225 * 9 6 5 11 11 C 1.50697 * 109.47363 * 180.02562 * 9 6 5 12 12 H 1.08005 * 119.99940 * 327.93670 * 11 9 6 13 13 C 1.37878 * 120.00350 * 147.92805 * 11 9 6 14 14 N 1.31516 * 120.00052 * 174.18092 * 13 11 9 15 15 Si 1.86797 * 119.99970 * 354.18892 * 13 11 9 16 16 H 1.48498 * 109.47180 * 274.99477 * 15 13 11 17 17 H 1.48500 * 109.46997 * 154.99397 * 15 13 11 18 18 H 1.48499 * 109.47063 * 34.99720 * 15 13 11 19 19 C 1.52993 * 109.47304 * 120.00152 * 2 1 3 20 20 H 1.09008 * 109.46926 * 299.99871 * 1 2 3 21 21 H 1.09000 * 109.47592 * 59.99661 * 1 2 3 22 22 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47026 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47595 * 300.00244 * 3 2 1 25 25 H 1.08998 * 109.47120 * 60.00363 * 3 2 1 26 26 H 1.09000 * 109.47317 * 299.99740 * 4 2 1 27 27 H 1.09002 * 109.47667 * 59.99532 * 4 2 1 28 28 H 1.08998 * 109.47254 * 179.97438 * 5 4 2 29 29 H 1.09000 * 109.46713 * 300.00035 * 5 4 2 30 30 H 0.96705 * 114.00060 * 294.11053 * 8 6 5 31 31 H 0.96999 * 120.00060 * 179.97438 * 14 13 11 32 32 H 1.09008 * 109.47193 * 60.00160 * 19 2 1 33 33 H 1.09000 * 109.47638 * 300.00200 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7217 -1.2491 6 6 4.0794 -1.4434 0.0001 7 1 3.7157 -2.4709 -0.0001 8 8 5.5084 -1.4435 0.0006 9 6 3.5695 -0.7222 1.2494 10 1 3.9332 0.3053 1.2497 11 6 4.0718 -1.4326 2.4798 12 1 4.2200 -2.5023 2.4631 13 6 4.3424 -0.7171 3.6269 14 7 4.6704 -1.3477 4.7334 15 14 4.2429 1.1482 3.6095 16 1 5.5308 1.7081 3.1270 17 1 3.9720 1.6423 4.9834 18 1 3.1466 1.5769 2.7042 19 6 2.0400 -0.7212 1.2491 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 -1.7488 -1.2494 27 1 1.6765 -0.2073 -2.1393 28 1 3.9332 -1.2359 -2.1389 29 1 3.9336 0.3058 -1.2488 30 1 5.9020 -1.9611 -0.7151 31 1 4.8611 -0.8443 5.5403 32 1 1.6767 -1.7490 1.2491 33 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259627818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:18 Heat of formation + Delta-G solvation = -79.223257 kcal Electronic energy + Delta-G solvation = -13740.678634 eV Core-core repulsion = 11572.175198 eV Total energy + Delta-G solvation = -2168.503436 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.11251 -35.60334 -32.89044 -31.04411 -30.22829 -26.93556 -25.19491 -24.63259 -21.62221 -19.71188 -17.91118 -16.72882 -16.34965 -14.89450 -14.18519 -13.94550 -13.63787 -13.31109 -12.83280 -12.53582 -12.34308 -11.66741 -11.49704 -11.34547 -11.21621 -10.99948 -10.72763 -10.51961 -10.39340 -9.96119 -9.83874 -9.63435 -9.23195 -8.95210 -8.64874 -8.36444 -5.95190 -3.90880 3.38660 3.45405 3.47126 4.54055 4.99057 5.13555 5.27170 5.39229 5.50623 5.64318 5.72544 5.88668 6.00356 6.03322 6.13023 6.20263 6.23294 6.26184 6.30884 6.50058 6.55590 6.64805 6.72369 6.79205 6.89549 7.09829 7.31203 7.48348 7.88053 8.55028 8.66315 9.09967 9.68804 11.18853 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.015929 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.187429 B = 1757.359943 C = 2140.880081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 C -0.142 4.142 4 C -0.098 4.098 5 C -0.155 4.155 6 C 0.118 3.882 7 H 0.041 0.959 8 O -0.550 6.550 9 C 0.021 3.979 10 H 0.040 0.960 11 C -0.493 4.493 12 H 0.069 0.931 13 C 0.069 3.931 14 N -0.906 5.906 15 Si 0.871 3.129 16 H -0.278 1.278 17 H -0.293 1.293 18 H -0.259 1.259 19 C -0.095 4.095 20 H 0.051 0.949 21 H 0.045 0.955 22 H 0.051 0.949 23 H 0.062 0.938 24 H 0.043 0.957 25 H 0.050 0.950 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.066 0.934 30 H 0.353 0.647 31 H 0.261 0.739 32 H 0.053 0.947 33 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 3.066 -11.452 13.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.074 4.074 3 C -0.199 4.199 4 C -0.136 4.136 5 C -0.193 4.193 6 C 0.059 3.941 7 H 0.059 0.941 8 O -0.352 6.352 9 C 0.002 3.998 10 H 0.058 0.942 11 C -0.531 4.531 12 H 0.087 0.913 13 C -0.131 4.131 14 N -0.545 5.545 15 Si 0.699 3.301 16 H -0.204 1.204 17 H -0.220 1.220 18 H -0.184 1.184 19 C -0.134 4.134 20 H 0.071 0.929 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.062 0.938 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.197 0.803 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.834 3.480 -10.714 12.686 hybrid contribution 0.080 0.618 -0.387 0.734 sum -5.754 4.099 -11.101 13.158 Atomic orbital electron populations 1.21847 0.95594 1.01206 1.00841 1.20711 0.94388 0.95669 0.96681 1.21972 1.01891 0.95660 1.00417 1.21456 0.95149 1.00047 0.96953 1.22394 0.96157 1.01942 0.98772 1.21888 0.80026 0.97578 0.94604 0.94102 1.86747 1.20188 1.74511 1.53741 1.19127 0.91129 0.96633 0.92902 0.94226 1.20856 1.42691 0.95749 0.93796 0.91251 1.25004 0.94750 0.97993 0.95362 1.69913 1.48264 1.35592 1.00738 0.86962 0.79271 0.87044 0.76821 1.20361 1.21969 1.18363 1.21854 0.97999 0.98919 0.94584 0.92940 0.93587 0.92959 0.91910 0.93832 0.93043 0.92328 0.92900 0.93216 0.91543 0.80331 0.92926 0.92778 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.47 37.16 0.31 -1.65 16 2 C -0.07 -1.25 0.77 -154.51 -0.12 -1.37 16 3 C -0.14 -2.39 7.78 37.16 0.29 -2.10 16 4 C -0.10 -1.50 4.73 -26.73 -0.13 -1.62 16 5 C -0.15 -2.55 5.30 -26.73 -0.14 -2.69 16 6 C 0.12 2.42 2.89 -26.73 -0.08 2.34 16 7 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 8 O -0.55 -11.66 12.92 -35.23 -0.46 -12.11 16 9 C 0.02 0.50 1.17 -91.80 -0.11 0.39 16 10 H 0.04 0.98 3.71 -51.93 -0.19 0.79 16 11 C -0.49 -14.22 8.50 -34.44 -0.29 -14.51 16 12 H 0.07 2.19 8.06 -52.48 -0.42 1.77 16 13 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 14 N -0.91 -28.60 13.96 55.43 0.77 -27.83 16 15 Si 0.87 22.31 26.76 -169.99 -4.55 17.76 16 16 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 18 H -0.26 -6.16 6.63 56.52 0.37 -5.79 16 19 C -0.10 -1.98 3.97 -26.76 -0.11 -2.09 16 20 H 0.05 0.75 8.14 -51.92 -0.42 0.32 16 21 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.06 1.15 4.81 -51.93 -0.25 0.90 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.88 8.01 -51.93 -0.42 0.47 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 30 H 0.35 5.45 9.12 45.56 0.42 5.87 16 31 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 32 H 0.05 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.06 1.27 7.84 -51.93 -0.41 0.86 16 LS Contribution 253.10 15.07 3.81 3.81 Total: -1.00 -31.95 253.10 -5.45 -37.40 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -4.57 Total: 2.31 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -0.46 Total: -21.33 kcal Atomic # 7 Polarization: -28.60 SS G_CDS: 0.77 Total: -27.83 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -0.46 Total: -12.11 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.55 Total: 17.76 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.95 -5.45 -37.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.823 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds