Wall clock time and date at job start Mon Mar 30 2020 01:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46952 * 2 1 4 4 C 1.52998 * 109.46854 * 240.00496 * 2 1 3 5 5 C 1.53002 * 109.47197 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47040 * 59.99653 * 5 4 2 7 7 H 1.08996 * 109.47232 * 60.00136 * 6 5 4 8 8 O 1.42898 * 109.46920 * 180.02562 * 6 5 4 9 9 C 1.52996 * 109.47100 * 300.00006 * 6 5 4 10 10 H 1.09000 * 109.47644 * 300.00225 * 9 6 5 11 11 C 1.50697 * 109.47363 * 180.02562 * 9 6 5 12 12 H 1.08005 * 119.99940 * 327.93670 * 11 9 6 13 13 C 1.37878 * 120.00350 * 147.92805 * 11 9 6 14 14 N 1.31516 * 120.00052 * 174.18092 * 13 11 9 15 15 Si 1.86797 * 119.99970 * 354.18892 * 13 11 9 16 16 H 1.48498 * 109.47180 * 274.99477 * 15 13 11 17 17 H 1.48500 * 109.46997 * 154.99397 * 15 13 11 18 18 H 1.48499 * 109.47063 * 34.99720 * 15 13 11 19 19 C 1.52993 * 109.47304 * 120.00152 * 2 1 3 20 20 H 1.09008 * 109.46926 * 299.99871 * 1 2 3 21 21 H 1.09000 * 109.47592 * 59.99661 * 1 2 3 22 22 H 1.08996 * 109.47230 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47026 * 179.97438 * 3 2 1 24 24 H 1.08995 * 109.47595 * 300.00244 * 3 2 1 25 25 H 1.08998 * 109.47120 * 60.00363 * 3 2 1 26 26 H 1.09000 * 109.47317 * 299.99740 * 4 2 1 27 27 H 1.09002 * 109.47667 * 59.99532 * 4 2 1 28 28 H 1.08998 * 109.47254 * 179.97438 * 5 4 2 29 29 H 1.09000 * 109.46713 * 300.00035 * 5 4 2 30 30 H 0.96705 * 114.00060 * 294.11053 * 8 6 5 31 31 H 0.96999 * 120.00060 * 179.97438 * 14 13 11 32 32 H 1.09008 * 109.47193 * 60.00160 * 19 2 1 33 33 H 1.09000 * 109.47638 * 300.00200 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 3.5699 -0.7217 -1.2491 6 6 4.0794 -1.4434 0.0001 7 1 3.7157 -2.4709 -0.0001 8 8 5.5084 -1.4435 0.0006 9 6 3.5695 -0.7222 1.2494 10 1 3.9332 0.3053 1.2497 11 6 4.0718 -1.4326 2.4798 12 1 4.2200 -2.5023 2.4631 13 6 4.3424 -0.7171 3.6269 14 7 4.6704 -1.3477 4.7334 15 14 4.2429 1.1482 3.6095 16 1 5.5308 1.7081 3.1270 17 1 3.9720 1.6423 4.9834 18 1 3.1466 1.5769 2.7042 19 6 2.0400 -0.7212 1.2491 20 1 -0.3633 0.5139 0.8901 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 -0.0005 23 1 3.1300 1.4425 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6767 1.9563 0.8900 26 1 1.6766 -1.7488 -1.2494 27 1 1.6765 -0.2073 -2.1393 28 1 3.9332 -1.2359 -2.1389 29 1 3.9336 0.3058 -1.2488 30 1 5.9020 -1.9611 -0.7151 31 1 4.8611 -0.8443 5.5403 32 1 1.6767 -1.7490 1.2491 33 1 1.6767 -0.2075 2.1392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259627818.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:18 Heat of formation + Delta-G solvation = -102.420664 kcal Electronic energy + Delta-G solvation = -13741.684549 eV Core-core repulsion = 11572.175198 eV Total energy + Delta-G solvation = -2169.509351 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.59184 -37.14135 -35.00265 -32.63010 -31.90702 -28.15953 -26.91620 -26.31260 -23.14527 -21.41277 -19.47825 -18.73312 -17.99033 -16.69924 -15.65137 -15.54434 -15.24505 -14.73956 -14.54329 -14.28608 -13.69515 -13.19736 -13.06440 -12.85644 -12.68699 -12.48463 -12.45314 -12.15480 -11.95621 -11.72207 -11.36969 -11.18115 -11.02771 -10.68261 -10.62534 -10.26671 -8.25848 -6.24949 1.32078 1.34130 1.44363 2.36806 3.10022 3.59527 3.88592 3.96789 4.17721 4.29066 4.34126 4.54443 4.62585 4.77656 4.80555 4.87250 4.93345 5.02782 5.08377 5.12282 5.22989 5.26429 5.31589 5.36998 5.41692 5.62635 5.68968 5.74550 5.78828 6.33668 6.77381 7.21484 7.37688 8.92169 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.032581 B = 0.015929 C = 0.013076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.187429 B = 1757.359943 C = 2140.880081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.073 4.073 3 C -0.144 4.144 4 C -0.096 4.096 5 C -0.144 4.144 6 C 0.115 3.885 7 H 0.033 0.967 8 O -0.580 6.580 9 C 0.017 3.983 10 H 0.033 0.967 11 C -0.495 4.495 12 H 0.022 0.978 13 C 0.006 3.994 14 N -0.958 5.958 15 Si 0.934 3.066 16 H -0.277 1.277 17 H -0.290 1.290 18 H -0.231 1.231 19 C -0.091 4.091 20 H 0.047 0.953 21 H 0.073 0.927 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.378 0.622 31 H 0.262 0.738 32 H 0.046 0.954 33 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.178 4.749 -14.231 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.073 4.073 3 C -0.201 4.201 4 C -0.134 4.134 5 C -0.182 4.182 6 C 0.056 3.944 7 H 0.051 0.949 8 O -0.386 6.386 9 C -0.002 4.002 10 H 0.051 0.949 11 C -0.533 4.533 12 H 0.041 0.959 13 C -0.190 4.190 14 N -0.599 5.599 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.154 1.154 19 C -0.130 4.130 20 H 0.066 0.934 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.063 0.937 24 H 0.095 0.905 25 H 0.060 0.940 26 H 0.082 0.918 27 H 0.105 0.895 28 H 0.099 0.901 29 H 0.083 0.917 30 H 0.225 0.775 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.244 5.152 -13.532 16.190 hybrid contribution 0.570 -0.043 0.477 0.745 sum -6.674 5.109 -13.055 15.526 Atomic orbital electron populations 1.21806 0.93336 1.01958 1.02014 1.20685 0.96217 0.95348 0.95012 1.21984 1.00741 0.95716 1.01635 1.21488 0.93929 1.00684 0.97252 1.22272 0.97179 1.01415 0.97317 1.21831 0.79862 0.97354 0.95305 0.94862 1.86665 1.20849 1.75359 1.55709 1.19160 0.93131 0.95763 0.92145 0.94881 1.21215 1.41891 0.93991 0.96210 0.95917 1.25896 0.94853 1.03296 0.94927 1.70073 1.50555 1.37654 1.01632 0.85947 0.80028 0.80720 0.77437 1.20336 1.21646 1.15427 1.21693 0.95701 0.99049 0.96520 0.93420 0.90800 0.92511 0.93697 0.90527 0.93983 0.91773 0.89477 0.90135 0.91720 0.77513 0.92934 0.93551 0.94487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 8.47 71.98 0.61 -2.68 16 2 C -0.07 -2.19 0.77 -52.18 -0.04 -2.23 16 3 C -0.14 -4.28 7.78 71.98 0.56 -3.72 16 4 C -0.10 -2.49 4.73 30.59 0.14 -2.34 16 5 C -0.14 -4.23 5.30 30.60 0.16 -4.07 16 6 C 0.12 4.60 2.89 30.59 0.09 4.69 16 7 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 8 O -0.58 -24.28 12.92 -148.98 -1.92 -26.21 16 9 C 0.02 0.80 1.17 -11.56 -0.01 0.78 16 10 H 0.03 1.61 3.71 -2.39 -0.01 1.60 16 11 C -0.49 -29.62 8.50 25.60 0.22 -29.41 16 12 H 0.02 1.51 8.06 -2.91 -0.02 1.49 16 13 C 0.01 0.34 5.47 84.65 0.46 0.80 16 14 N -0.96 -62.98 13.96 21.45 0.30 -62.68 16 15 Si 0.93 46.75 26.76 68.60 1.84 48.59 16 16 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 17 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 18 H -0.23 -10.41 6.63 99.48 0.66 -9.75 16 19 C -0.09 -3.73 3.97 30.58 0.12 -3.61 16 20 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 21 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 23 H 0.04 1.49 4.81 -2.39 -0.01 1.48 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 1.31 8.01 -2.39 -0.02 1.29 16 26 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.06 1.96 6.43 -2.39 -0.02 1.94 16 30 H 0.38 11.19 9.12 -74.05 -0.68 10.51 16 31 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 32 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 33 H 0.04 1.61 7.84 -2.39 -0.02 1.60 16 Total: -1.00 -71.92 253.10 2.88 -69.05 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 0.36 Total: 13.04 kcal Atomic # 6 Polarization: -44.10 SS G_CDS: 2.31 Total: -41.79 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: 0.30 Total: -62.68 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.92 Total: -26.21 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.84 Total: 48.59 kcal Total: -71.92 2.88 -69.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259627818.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.375 kcal (2) G-P(sol) polarization free energy of solvation -71.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds