Wall clock time and date at job start Mon Mar 30 2020 02:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42894 * 109.47488 * 2 1 4 4 C 1.42900 * 114.00094 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47002 * 29.99905 * 4 3 2 6 6 C 1.52999 * 109.47616 * 270.00173 * 4 3 2 7 7 C 1.52997 * 109.47317 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.47060 * 59.99960 * 7 6 4 9 9 C 1.53002 * 109.47233 * 299.99657 * 8 7 6 10 10 C 1.52997 * 109.46817 * 60.00194 * 9 8 7 11 11 H 1.09002 * 109.47153 * 60.00231 * 10 9 8 12 12 C 1.50699 * 109.47078 * 180.02562 * 10 9 8 13 13 H 1.08003 * 120.00271 * 120.00264 * 12 10 9 14 14 C 1.37877 * 120.00384 * 300.00152 * 12 10 9 15 15 N 1.31515 * 119.99644 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00171 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47325 * 60.00287 * 16 14 12 18 18 H 1.48508 * 109.46996 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.47425 * 299.99866 * 16 14 12 20 20 H 1.08998 * 109.47138 * 300.00950 * 1 2 3 21 21 H 1.09005 * 109.46876 * 59.99931 * 1 2 3 22 22 H 1.08996 * 109.47790 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47138 * 239.99050 * 2 1 3 24 24 H 1.09005 * 109.46876 * 120.00069 * 2 1 3 25 25 H 1.08996 * 109.46929 * 59.99102 * 6 4 3 26 26 H 1.09002 * 109.46716 * 299.99907 * 6 4 3 27 27 H 1.09002 * 109.47153 * 299.99641 * 7 6 4 28 28 H 1.09001 * 109.46832 * 179.97438 * 7 6 4 29 29 H 1.08992 * 109.47399 * 59.99823 * 8 7 6 30 30 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 31 31 H 1.08993 * 109.47662 * 180.02562 * 9 8 7 32 32 H 1.09002 * 109.47075 * 300.00932 * 9 8 7 33 33 H 0.96999 * 120.00073 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8636 0.6013 -0.5129 6 6 3.9388 1.5004 1.4432 7 6 5.4641 1.6205 1.4438 8 6 5.8747 2.9057 0.7223 9 6 5.3669 2.8652 -0.7204 10 6 3.8417 2.7452 -0.7209 11 1 3.4094 3.6041 -0.2076 12 6 3.3415 2.7047 -2.1419 13 1 2.7862 1.8482 -2.4948 14 6 3.5927 3.7610 -2.9916 15 7 4.2685 4.8042 -2.5619 16 14 2.9733 3.7105 -4.7532 17 1 1.4930 3.5936 -4.7542 18 1 3.3713 4.9579 -5.4538 19 1 3.5628 2.5402 -5.4518 20 1 -0.3633 0.5140 0.8899 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5140 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 3.6466 0.5847 1.9571 26 1 3.5062 2.3590 1.9568 27 1 5.8964 0.7616 0.9304 28 1 5.8258 1.6497 2.4716 29 1 5.4425 3.7645 1.2357 30 1 6.9614 2.9910 0.7223 31 1 5.6598 3.7806 -1.2345 32 1 5.7991 2.0063 -1.2338 33 1 4.4449 5.5476 -3.1595 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259640468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:42 Heat of formation + Delta-G solvation = -94.107731 kcal Electronic energy + Delta-G solvation = -13376.881494 eV Core-core repulsion = 11207.732619 eV Total energy + Delta-G solvation = -2169.148875 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.00052 -37.35587 -34.83124 -32.32660 -31.24037 -29.97004 -26.65069 -23.82505 -22.86449 -22.57017 -20.47367 -18.40221 -17.57303 -16.67484 -16.33719 -15.68689 -14.99925 -14.79494 -14.23567 -14.08209 -13.95042 -13.50000 -12.97094 -12.83392 -12.75037 -12.51123 -12.28625 -12.12225 -11.86092 -11.74017 -11.56222 -11.29045 -10.97948 -10.65538 -10.39317 -9.97963 -8.04539 -6.16528 1.39551 1.41680 1.49010 2.44823 3.00979 3.24285 4.01907 4.10783 4.23215 4.27607 4.36500 4.52825 4.56907 4.60427 4.77026 4.85991 4.89616 4.97241 5.01421 5.08815 5.20553 5.27590 5.36322 5.37752 5.46407 5.61066 5.69749 5.94468 6.13300 6.42470 6.71052 6.92143 7.48926 8.99353 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.025105 B = 0.015081 C = 0.009923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.068214 B = 1856.195495 C = 2820.997134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.047 3.953 3 O -0.402 6.402 4 C 0.104 3.896 5 H 0.043 0.957 6 C -0.133 4.133 7 C -0.105 4.105 8 C -0.117 4.117 9 C -0.103 4.103 10 C 0.050 3.950 11 H -0.010 1.010 12 C -0.518 4.518 13 H 0.044 0.956 14 C 0.010 3.990 15 N -0.919 5.919 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.270 1.270 20 H 0.061 0.939 21 H 0.046 0.954 22 H 0.095 0.905 23 H 0.036 0.964 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.052 0.948 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 -8.647 6.362 10.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.321 6.321 4 C 0.046 3.954 5 H 0.061 0.939 6 C -0.170 4.170 7 C -0.142 4.142 8 C -0.155 4.155 9 C -0.141 4.141 10 C 0.032 3.968 11 H 0.008 0.992 12 C -0.556 4.556 13 H 0.062 0.938 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.776 3.224 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.195 1.195 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.114 0.886 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.091 0.909 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.777 -8.320 6.298 10.464 hybrid contribution -0.227 0.219 -1.161 1.203 sum -1.004 -8.102 5.137 9.645 Atomic orbital electron populations 1.21726 0.92895 1.03190 1.02258 1.22628 0.96488 0.84058 0.99740 1.87947 1.22307 1.26853 1.95039 1.22185 0.79810 0.98432 0.94938 0.93940 1.21998 0.96904 1.01704 0.96436 1.21444 0.94222 0.97617 1.00933 1.21590 1.00057 0.97765 0.96058 1.21425 0.96343 1.00970 0.95374 1.18694 0.92990 0.91467 0.93653 0.99223 1.21379 1.33685 1.03220 0.97296 0.93793 1.25696 0.95614 0.95231 1.02264 1.70006 1.41366 1.07704 1.36831 0.85734 0.78679 0.77469 0.80503 1.20234 1.20763 1.19491 0.92036 0.93483 0.88626 0.94519 0.92448 0.90864 0.92918 0.91661 0.89832 0.93725 0.91517 0.91969 0.94984 0.93158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.96 10.28 71.98 0.74 -3.22 16 2 C 0.05 1.58 6.47 71.98 0.47 2.04 16 3 O -0.40 -17.76 9.58 -148.98 -1.43 -19.19 16 4 C 0.10 4.53 1.99 30.60 0.06 4.59 16 5 H 0.04 1.83 7.79 -2.39 -0.02 1.81 16 6 C -0.13 -4.68 5.54 30.59 0.17 -4.51 16 7 C -0.10 -3.30 5.92 30.59 0.18 -3.12 16 8 C -0.12 -4.43 5.92 30.60 0.18 -4.25 16 9 C -0.10 -4.96 4.98 30.59 0.15 -4.81 16 10 C 0.05 2.66 1.85 -11.54 -0.02 2.64 16 11 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 12 C -0.52 -30.06 8.23 25.60 0.21 -29.85 16 13 H 0.04 2.56 7.70 -2.91 -0.02 2.54 16 14 C 0.01 0.56 5.30 84.65 0.45 1.01 16 15 N -0.92 -54.88 11.32 21.45 0.24 -54.64 16 16 Si 0.95 45.48 29.54 68.60 2.03 47.50 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 21 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 22 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 23 H 0.04 1.23 8.09 -2.39 -0.02 1.21 16 24 H 0.06 1.62 7.87 -2.38 -0.02 1.60 16 25 H 0.07 2.17 7.87 -2.39 -0.02 2.15 16 26 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.07 2.21 8.14 -2.39 -0.02 2.20 16 31 H 0.06 3.41 6.07 -2.39 -0.01 3.39 16 32 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -64.44 263.34 4.47 -59.96 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: 1.04 Total: 5.86 kcal Atomic # 6 Polarization: -42.08 SS G_CDS: 2.59 Total: -39.49 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.24 Total: -54.64 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.43 Total: -19.19 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.50 kcal Total: -64.44 4.47 -59.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.147 kcal (2) G-P(sol) polarization free energy of solvation -64.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds