Wall clock time and date at job start Mon Mar 30 2020 02:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42898 * 109.46651 * 2 1 4 4 C 1.42906 * 113.99801 * 179.97438 * 3 2 1 5 5 H 1.08995 * 109.47174 * 330.00678 * 4 3 2 6 6 C 1.53004 * 109.46530 * 90.00258 * 4 3 2 7 7 C 1.53011 * 109.46792 * 179.97438 * 6 4 3 8 8 C 1.52994 * 109.47189 * 300.00270 * 7 6 4 9 9 C 1.53005 * 109.47461 * 59.99752 * 8 7 6 10 10 C 1.52995 * 109.46904 * 300.00107 * 9 8 7 11 11 H 1.09002 * 109.47584 * 299.99441 * 10 9 8 12 12 C 1.50708 * 109.47303 * 179.97438 * 10 9 8 13 13 H 1.07998 * 120.00403 * 245.35490 * 12 10 9 14 14 C 1.37879 * 119.99846 * 65.34501 * 12 10 9 15 15 N 1.31506 * 120.00216 * 187.13433 * 14 12 10 16 16 Si 1.86803 * 119.99768 * 7.13954 * 14 12 10 17 17 H 1.48493 * 109.47280 * 269.99570 * 16 14 12 18 18 H 1.48504 * 109.47262 * 29.99600 * 16 14 12 19 19 H 1.48502 * 109.46707 * 149.99427 * 16 14 12 20 20 H 1.09003 * 109.47725 * 59.99843 * 1 2 3 21 21 H 1.09001 * 109.46921 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47216 * 299.99564 * 1 2 3 23 23 H 1.09004 * 109.46767 * 240.00990 * 2 1 3 24 24 H 1.08997 * 109.47352 * 120.00024 * 2 1 3 25 25 H 1.08997 * 109.47183 * 299.99925 * 6 4 3 26 26 H 1.08999 * 109.47530 * 60.00323 * 6 4 3 27 27 H 1.08999 * 109.46768 * 59.99919 * 7 6 4 28 28 H 1.08999 * 109.46931 * 180.02562 * 7 6 4 29 29 H 1.08995 * 109.47500 * 180.02562 * 8 7 6 30 30 H 1.09002 * 109.47090 * 300.00272 * 8 7 6 31 31 H 1.08997 * 109.47170 * 180.02562 * 9 8 7 32 32 H 1.08995 * 109.46732 * 59.99892 * 9 8 7 33 33 H 0.97009 * 120.00036 * 354.91179 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.8631 0.6018 0.5146 6 6 3.9397 1.5003 -1.4418 7 6 5.4650 1.6219 -1.4412 8 6 5.8738 2.9078 -0.7201 9 6 5.3649 2.8677 0.7222 10 6 3.8398 2.7462 0.7216 11 1 3.4070 3.6044 0.2074 12 6 3.3384 2.7061 2.1423 13 1 2.8597 1.8151 2.5211 14 6 3.4910 3.8068 2.9585 15 7 3.1829 3.7270 4.2345 16 14 4.1351 5.4115 2.2518 17 1 5.6161 5.4391 2.3559 18 1 3.7372 5.5192 0.8251 19 1 3.5640 6.5519 3.0124 20 1 -0.3635 0.5139 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8933 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 3.6480 0.5844 -1.9556 26 1 3.5074 2.3588 -1.9559 27 1 5.8976 0.7637 -0.9270 28 1 5.8275 1.6509 -2.4688 29 1 6.9603 2.9946 -0.7201 30 1 5.4411 3.7660 -1.2343 31 1 5.6558 3.7840 1.2358 32 1 5.7975 2.0095 1.2364 33 1 2.7795 2.9180 4.5864 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259640469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:44 Heat of formation + Delta-G solvation = -76.964242 kcal Electronic energy + Delta-G solvation = -13440.367456 eV Core-core repulsion = 11271.961978 eV Total energy + Delta-G solvation = -2168.405478 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.55517 -35.94468 -32.82078 -31.02259 -30.04517 -28.53528 -24.17841 -22.57297 -21.55955 -20.59485 -18.94491 -17.38477 -16.15909 -15.05338 -14.68065 -13.73614 -13.69172 -13.40046 -12.93865 -12.76794 -12.32877 -11.89596 -11.71599 -11.41681 -11.10241 -10.95066 -10.67113 -10.47098 -10.24416 -10.04749 -9.90952 -9.56617 -9.30434 -8.62837 -8.51994 -8.24060 -6.29329 -3.92433 3.42481 3.52074 3.66416 4.39802 4.58139 5.30793 5.35929 5.41312 5.45313 5.52850 5.61782 5.76147 5.89045 5.99429 6.03880 6.13218 6.17132 6.24909 6.30284 6.36406 6.43866 6.48131 6.63098 6.69985 6.88654 7.03929 7.18051 7.51067 8.11624 8.27126 8.51078 9.03157 9.75356 11.09895 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.026847 B = 0.015732 C = 0.010884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.700777 B = 1779.361146 C = 2571.862438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.367 6.367 4 C 0.111 3.889 5 H 0.046 0.954 6 C -0.142 4.142 7 C -0.110 4.110 8 C -0.126 4.126 9 C -0.117 4.117 10 C 0.017 3.983 11 H 0.033 0.967 12 C -0.572 4.572 13 H 0.054 0.946 14 C 0.023 3.977 15 N -0.921 5.921 16 Si 1.054 2.946 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.292 1.292 20 H 0.057 0.943 21 H 0.061 0.939 22 H 0.063 0.937 23 H 0.034 0.966 24 H 0.041 0.959 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -5.011 -10.710 11.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.286 6.286 4 C 0.053 3.947 5 H 0.064 0.936 6 C -0.180 4.180 7 C -0.147 4.147 8 C -0.164 4.164 9 C -0.155 4.155 10 C -0.002 4.002 11 H 0.051 0.949 12 C -0.610 4.610 13 H 0.073 0.927 14 C -0.180 4.180 15 N -0.557 5.557 16 Si 0.885 3.115 17 H -0.212 1.212 18 H -0.204 1.204 19 H -0.219 1.219 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.846 -3.308 -10.298 10.972 hybrid contribution -0.292 -1.918 -0.386 1.978 sum 1.554 -5.226 -10.683 11.994 Atomic orbital electron populations 1.21702 0.94646 1.01192 1.02971 1.22333 0.95000 0.85794 0.98796 1.87989 1.21908 1.23980 1.94719 1.22074 0.79857 1.00012 0.92765 0.93578 1.22116 0.95828 1.01153 0.98940 1.21420 0.95470 0.98445 0.99407 1.21679 0.99434 0.97266 0.97983 1.21924 0.98615 1.01366 0.93579 1.19227 0.91092 0.92817 0.97060 0.94858 1.21964 1.41336 1.01910 0.95810 0.92737 1.25738 0.95827 1.02009 0.94433 1.70812 1.40645 1.31546 1.12652 0.83856 0.76184 0.75886 0.75607 1.21234 1.20426 1.21867 0.92348 0.92033 0.91748 0.94812 0.94122 0.93270 0.91706 0.92439 0.92802 0.93011 0.92501 0.92633 0.92557 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.28 37.16 0.38 -1.83 16 2 C 0.06 1.02 6.47 37.16 0.24 1.26 16 3 O -0.37 -8.11 9.61 -35.23 -0.34 -8.45 16 4 C 0.11 2.36 1.99 -26.73 -0.05 2.31 16 5 H 0.05 0.99 7.79 -51.93 -0.40 0.59 16 6 C -0.14 -2.49 5.54 -26.72 -0.15 -2.64 16 7 C -0.11 -1.73 5.92 -26.73 -0.16 -1.89 16 8 C -0.13 -2.19 5.92 -26.73 -0.16 -2.35 16 9 C -0.12 -2.53 4.83 -26.73 -0.13 -2.66 16 10 C 0.02 0.42 1.42 -91.77 -0.13 0.29 16 11 H 0.03 0.86 6.60 -51.93 -0.34 0.51 16 12 C -0.57 -16.55 8.55 -34.44 -0.29 -16.84 16 13 H 0.05 1.71 7.98 -52.49 -0.42 1.29 16 14 C 0.02 0.68 5.42 -17.82 -0.10 0.58 16 15 N -0.92 -29.19 13.69 55.43 0.76 -28.43 16 16 Si 1.05 26.40 25.41 -169.99 -4.32 22.08 16 17 H -0.29 -6.71 6.76 56.52 0.38 -6.33 16 18 H -0.28 -6.56 6.36 56.52 0.36 -6.20 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 24 H 0.04 0.73 8.08 -51.93 -0.42 0.31 16 25 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 1.26 4.48 -51.93 -0.23 1.02 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.26 8.38 8.72 -40.82 -0.36 8.02 16 LS Contribution 257.95 15.07 3.89 3.89 Total: -1.00 -31.18 257.95 -6.21 -37.39 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: -5.65 Total: -2.71 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: -0.55 Total: -23.77 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.76 Total: -28.43 kcal Atomic # 8 Polarization: -8.11 SS G_CDS: -0.34 Total: -8.45 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -4.32 Total: 22.08 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.18 -6.21 -37.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259640469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.570 kcal (2) G-P(sol) polarization free energy of solvation -31.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds