Wall clock time and date at job start Mon Mar 30 2020 01:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47138 * 2 1 4 4 C 1.52992 * 109.47075 * 120.00204 * 2 1 3 5 5 C 1.53008 * 109.47448 * 59.99901 * 4 2 1 6 6 C 1.52999 * 109.46901 * 59.99849 * 5 4 2 7 7 H 1.09001 * 109.47339 * 60.00238 * 6 5 4 8 8 C 1.50697 * 109.47299 * 180.02562 * 6 5 4 9 9 H 1.07991 * 120.00449 * 119.72229 * 8 6 5 10 10 C 1.37885 * 119.99686 * 300.00060 * 8 6 5 11 11 N 1.31514 * 120.00035 * 179.72339 * 10 8 6 12 12 Si 1.86803 * 119.99853 * 359.72191 * 10 8 6 13 13 H 1.48500 * 109.46986 * 90.00256 * 12 10 8 14 14 H 1.48496 * 109.47029 * 210.00273 * 12 10 8 15 15 H 1.48499 * 109.47352 * 330.00102 * 12 10 8 16 16 C 1.53001 * 109.47159 * 300.00364 * 6 5 4 17 17 H 1.09006 * 109.46890 * 299.99671 * 16 6 5 18 18 O 1.42895 * 109.47095 * 180.02562 * 16 6 5 19 19 C 1.52994 * 109.47367 * 60.00014 * 16 6 5 20 20 H 1.09001 * 109.47453 * 299.99829 * 1 2 3 21 21 H 1.08996 * 109.47498 * 59.99602 * 1 2 3 22 22 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47005 * 180.02562 * 3 2 1 24 24 H 1.09006 * 109.47343 * 299.99995 * 3 2 1 25 25 H 1.08998 * 109.47353 * 60.00288 * 3 2 1 26 26 H 1.09001 * 109.47602 * 299.99597 * 4 2 1 27 27 H 1.09003 * 109.47424 * 179.97438 * 4 2 1 28 28 H 1.08993 * 109.47078 * 300.00117 * 5 4 2 29 29 H 1.08997 * 109.46877 * 179.97438 * 5 4 2 30 30 H 0.97000 * 119.99706 * 179.97438 * 11 10 8 31 31 H 0.96710 * 114.00129 * 179.97438 * 18 16 6 32 32 H 1.09006 * 109.47343 * 179.97438 * 19 16 6 33 33 H 1.09001 * 109.47005 * 60.00203 * 19 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.5300 -2.1638 1.2492 6 6 2.0399 -2.8850 -0.0001 7 1 3.1299 -2.8851 -0.0001 8 6 1.5372 -4.3057 -0.0005 9 1 0.9126 -4.6573 -0.8083 10 6 1.8698 -5.1549 1.0336 11 7 1.4266 -6.3931 1.0361 12 14 2.9501 -4.5467 2.4310 13 1 2.0967 -3.9762 3.5041 14 1 3.7392 -5.6804 2.9761 15 1 3.8732 -3.5000 1.9235 16 6 1.5299 -2.1637 -1.2493 17 1 0.4399 -2.1638 -1.2493 18 8 2.0058 -2.8376 -2.4161 19 6 2.0399 -0.7213 -1.2493 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 3.1300 1.4424 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 -0.2075 2.1392 27 1 3.1300 -0.7217 1.2490 28 1 0.4400 -2.1638 1.2492 29 1 1.8937 -2.6777 2.1389 30 1 1.6610 -6.9906 1.7634 31 1 1.7201 -2.4343 -3.2473 32 1 1.6770 -0.2075 -2.1395 33 1 3.1299 -0.7213 -1.2494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259644413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:21 Heat of formation + Delta-G solvation = -96.313725 kcal Electronic energy + Delta-G solvation = -13702.160441 eV Core-core repulsion = 11532.915907 eV Total energy + Delta-G solvation = -2169.244534 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.68968 -36.99568 -35.43187 -33.26315 -30.50871 -28.67192 -28.13180 -25.06233 -23.61027 -21.53589 -19.33794 -18.77918 -17.99950 -16.95294 -15.79849 -15.70740 -14.96039 -14.87297 -14.81302 -13.96359 -13.72806 -13.47643 -13.22659 -12.92866 -12.74339 -12.59420 -12.38520 -11.96434 -11.75243 -11.73094 -11.42855 -11.23371 -11.16643 -10.74979 -10.56650 -10.29014 -8.27984 -6.29193 1.26278 1.33322 1.43910 2.32261 3.04896 3.56052 3.78240 3.89921 4.09677 4.33189 4.38211 4.53398 4.59150 4.65781 4.71511 4.75595 4.92686 4.99255 5.05779 5.10327 5.17295 5.24095 5.27336 5.29843 5.49533 5.53980 5.59578 5.72617 5.78367 6.33807 6.75453 7.17994 7.34032 8.89793 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039813 B = 0.014051 C = 0.011803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 703.114465 B = 1992.303399 C = 2371.701384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.132 4.132 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.019 3.981 7 H 0.013 0.987 8 C -0.503 4.503 9 H 0.027 0.973 10 C 0.003 3.997 11 N -0.955 5.955 12 Si 0.951 3.049 13 H -0.260 1.260 14 H -0.300 1.300 15 H -0.251 1.251 16 C 0.121 3.879 17 H 0.044 0.956 18 O -0.582 6.582 19 C -0.130 4.130 20 H 0.065 0.935 21 H 0.067 0.933 22 H 0.043 0.957 23 H 0.053 0.947 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.379 0.621 32 H 0.083 0.917 33 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.495 17.364 -1.047 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.059 4.059 3 C -0.189 4.189 4 C -0.148 4.148 5 C -0.156 4.156 6 C 0.000 4.000 7 H 0.031 0.969 8 C -0.541 4.541 9 H 0.045 0.955 10 C -0.192 4.192 11 N -0.596 5.596 12 Si 0.778 3.222 13 H -0.186 1.186 14 H -0.228 1.228 15 H -0.175 1.175 16 C 0.062 3.938 17 H 0.062 0.938 18 O -0.388 6.388 19 C -0.167 4.167 20 H 0.084 0.916 21 H 0.086 0.914 22 H 0.062 0.938 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.101 0.899 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.763 16.834 -0.512 16.859 hybrid contribution 0.083 -0.492 0.170 0.527 sum 0.846 16.342 -0.342 16.368 Atomic orbital electron populations 1.21976 0.94223 1.01521 1.02513 1.20469 0.96147 0.95800 0.93532 1.21799 1.00903 0.93591 1.02643 1.21706 1.00207 0.94294 0.98566 1.21867 1.01016 0.95627 0.97084 1.19101 0.95480 0.93172 0.92257 0.96926 1.21292 1.30385 0.96166 1.06236 0.95478 1.25933 0.97340 0.94836 1.01100 1.70068 1.48062 1.07230 1.34275 0.85808 0.79493 0.77312 0.79582 1.18629 1.22816 1.17544 1.21758 0.96194 0.90625 0.85180 0.93835 1.86671 1.77707 1.57980 1.16490 1.22275 1.00898 0.94637 0.98932 0.91622 0.91396 0.93830 0.92752 0.91443 0.91617 0.90511 0.92652 0.91909 0.94760 0.92756 0.77370 0.89888 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 7.78 71.98 0.56 -3.07 16 2 C -0.06 -1.57 0.77 -52.18 -0.04 -1.61 16 3 C -0.13 -2.61 8.47 71.98 0.61 -2.00 16 4 C -0.11 -3.47 4.73 30.59 0.14 -3.33 16 5 C -0.12 -4.94 4.42 30.60 0.14 -4.81 16 6 C 0.02 0.91 1.44 -11.54 -0.02 0.90 16 7 H 0.01 0.65 7.19 -2.39 -0.02 0.64 16 8 C -0.50 -30.48 8.80 25.60 0.23 -30.25 16 9 H 0.03 1.84 7.94 -2.92 -0.02 1.82 16 10 C 0.00 0.21 5.45 84.66 0.46 0.68 16 11 N -0.95 -62.70 13.96 21.45 0.30 -62.40 16 12 Si 0.95 47.26 24.38 68.60 1.67 48.93 16 13 H -0.26 -12.04 6.86 99.48 0.68 -11.36 16 14 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 15 H -0.25 -11.75 6.53 99.48 0.65 -11.10 16 16 C 0.12 4.84 2.57 30.59 0.08 4.92 16 17 H 0.04 1.77 6.43 -2.38 -0.02 1.75 16 18 O -0.58 -24.38 12.91 -148.98 -1.92 -26.30 16 19 C -0.13 -3.86 4.35 30.59 0.13 -3.72 16 20 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.04 1.32 4.81 -2.39 -0.01 1.31 16 23 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 24 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 27 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 28 H 0.06 2.61 6.43 -2.39 -0.02 2.59 16 29 H 0.03 1.52 3.29 -2.39 -0.01 1.51 16 30 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 31 H 0.38 11.07 9.08 -74.05 -0.67 10.40 16 32 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -72.29 247.29 2.67 -69.62 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.33 Total: 12.45 kcal Atomic # 6 Polarization: -44.59 SS G_CDS: 2.29 Total: -42.30 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: 0.30 Total: -62.40 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.92 Total: -26.30 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Total: -72.29 2.67 -69.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.692 kcal (2) G-P(sol) polarization free energy of solvation -72.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds