Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47214 * 119.99869 * 2 1 3 5 5 C 1.52998 * 109.46839 * 60.00371 * 4 2 1 6 6 C 1.53001 * 109.47429 * 60.00301 * 5 4 2 7 7 H 1.08992 * 109.47222 * 59.99685 * 6 5 4 8 8 C 1.50695 * 109.47014 * 180.02562 * 6 5 4 9 9 H 1.08007 * 120.00106 * 119.99809 * 8 6 5 10 10 C 1.37876 * 119.99997 * 299.99390 * 8 6 5 11 11 N 1.31512 * 120.00309 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 120.00050 * 0.02562 * 10 8 6 13 13 H 1.48499 * 109.47027 * 89.99846 * 12 10 8 14 14 H 1.48496 * 109.47314 * 209.99908 * 12 10 8 15 15 H 1.48497 * 109.46851 * 330.00145 * 12 10 8 16 16 C 1.53002 * 109.46864 * 299.99684 * 6 5 4 17 17 H 1.09002 * 109.47413 * 179.97438 * 16 6 5 18 18 O 1.42905 * 109.47357 * 300.00517 * 16 6 5 19 19 C 1.53003 * 109.47439 * 240.00205 * 2 1 3 20 20 H 1.08995 * 109.47118 * 311.16242 * 1 2 3 21 21 H 1.09001 * 109.47165 * 71.16747 * 1 2 3 22 22 H 1.08998 * 109.46746 * 191.16099 * 1 2 3 23 23 H 1.08992 * 109.47069 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.46767 * 299.99893 * 3 2 1 25 25 H 1.09002 * 109.46702 * 60.00023 * 3 2 1 26 26 H 1.09002 * 109.47203 * 180.02562 * 4 2 1 27 27 H 1.08999 * 109.46952 * 300.00203 * 4 2 1 28 28 H 1.09004 * 109.46867 * 180.02562 * 5 4 2 29 29 H 1.09002 * 109.47168 * 299.99954 * 5 4 2 30 30 H 0.96999 * 120.00614 * 180.02562 * 11 10 8 31 31 H 0.96697 * 114.00229 * 180.02562 * 18 16 6 32 32 H 1.08995 * 109.47396 * 59.99565 * 19 2 1 33 33 H 1.09002 * 109.47196 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 1 3.1301 -2.8850 0.0000 8 6 1.5373 -4.3056 -0.0003 9 1 0.9164 -4.6585 -0.8105 10 6 1.8699 -5.1548 1.0337 11 7 1.4315 -6.3947 1.0333 12 14 2.9433 -4.5442 2.4354 13 1 2.0842 -3.9784 3.5064 14 1 3.7349 -5.6756 2.9817 15 1 3.8638 -3.4933 1.9322 16 6 1.5301 -2.1638 -1.2493 17 1 1.8938 -2.6773 -2.1393 18 8 0.1011 -2.1637 -1.2493 19 6 2.0401 -0.7212 -1.2493 20 1 -0.3633 0.6764 0.7736 21 1 -0.3633 0.3317 -0.9727 22 1 -0.3633 -1.0082 0.1989 23 1 3.1299 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 -0.7208 1.2495 27 1 1.6766 -0.2074 2.1392 28 1 1.8930 -2.6774 2.1394 29 1 0.4400 -2.1638 1.2492 30 1 1.6652 -6.9921 1.7609 31 1 -0.2923 -1.7224 -2.0145 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259644418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = -64.988378 kcal Electronic energy + Delta-G solvation = -13873.272329 eV Core-core repulsion = 11705.386163 eV Total energy + Delta-G solvation = -2167.886165 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.36510 -34.95630 -33.51699 -31.27981 -29.29497 -27.01573 -26.72876 -23.14766 -22.07981 -19.71934 -18.21225 -16.57900 -15.87069 -15.30191 -14.29778 -14.01597 -13.68695 -13.27474 -12.77689 -12.38490 -12.21119 -12.09900 -11.66539 -11.32805 -11.15306 -11.02979 -10.67007 -10.40099 -10.25580 -9.92988 -9.81909 -9.53408 -9.07666 -8.86019 -8.51697 -8.38998 -5.96445 -3.92968 3.33810 3.42846 3.45241 4.49266 5.02426 5.14313 5.26476 5.31700 5.41636 5.75756 5.81195 5.90929 6.00655 6.06859 6.14410 6.18268 6.22932 6.30061 6.39923 6.45119 6.61885 6.64277 6.68445 6.82808 7.08584 7.21332 7.25053 7.62350 7.85876 8.47782 8.68365 9.11819 9.66046 11.17313 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045734 B = 0.014020 C = 0.012054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.084948 B = 1996.656791 C = 2322.330994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.140 4.140 4 C -0.111 4.111 5 C -0.118 4.118 6 C 0.022 3.978 7 H 0.033 0.967 8 C -0.496 4.496 9 H 0.076 0.924 10 C 0.065 3.935 11 N -0.905 5.905 12 Si 0.886 3.114 13 H -0.280 1.280 14 H -0.300 1.300 15 H -0.267 1.267 16 C 0.124 3.876 17 H 0.043 0.957 18 O -0.541 6.541 19 C -0.142 4.142 20 H 0.033 0.967 21 H 0.040 0.960 22 H 0.102 0.898 23 H 0.048 0.952 24 H 0.048 0.952 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.261 0.739 31 H 0.351 0.649 32 H 0.052 0.948 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.905 13.287 -2.446 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 C -0.198 4.198 4 C -0.149 4.149 5 C -0.155 4.155 6 C 0.004 3.996 7 H 0.051 0.949 8 C -0.535 4.535 9 H 0.094 0.906 10 C -0.135 4.135 11 N -0.544 5.544 12 Si 0.717 3.283 13 H -0.207 1.207 14 H -0.228 1.228 15 H -0.192 1.192 16 C 0.065 3.935 17 H 0.061 0.939 18 O -0.344 6.344 19 C -0.180 4.180 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.121 0.879 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.071 0.929 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.011 12.789 -1.783 12.952 hybrid contribution 0.591 0.614 0.352 0.923 sum 1.603 13.403 -1.431 13.574 Atomic orbital electron populations 1.22259 0.94323 1.04485 0.99581 1.20390 0.96313 0.93546 0.95355 1.21911 1.00441 0.96525 1.00874 1.21675 0.99637 0.97398 0.96178 1.21955 1.01862 0.92573 0.99138 1.19179 0.95488 0.95243 0.89731 0.94887 1.20990 1.31219 0.92689 1.08553 0.90594 1.25020 0.95771 0.94810 0.97927 1.69900 1.46079 1.05564 1.32898 0.86869 0.80940 0.77400 0.83093 1.20728 1.22805 1.19237 1.21715 0.80480 0.91953 0.99347 0.93871 1.86756 1.19903 1.80956 1.46736 1.22387 1.00782 0.97961 0.96824 0.94825 0.94109 0.87939 0.93285 0.93328 0.93195 0.93113 0.93334 0.94064 0.90925 0.92892 0.80434 0.92974 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 7.10 37.16 0.26 -2.05 16 2 C -0.06 -0.88 0.77 -154.50 -0.12 -1.00 16 3 C -0.14 -1.84 8.45 37.16 0.31 -1.53 16 4 C -0.11 -2.02 4.73 -26.73 -0.13 -2.15 16 5 C -0.12 -2.62 4.35 -26.73 -0.12 -2.74 16 6 C 0.02 0.53 1.53 -91.77 -0.14 0.39 16 7 H 0.03 0.80 7.20 -51.93 -0.37 0.43 16 8 C -0.50 -14.24 8.81 -34.44 -0.30 -14.54 16 9 H 0.08 2.39 7.94 -52.48 -0.42 1.98 16 10 C 0.06 1.92 5.45 -17.82 -0.10 1.83 16 11 N -0.91 -28.45 13.96 55.43 0.77 -27.67 16 12 Si 0.89 22.60 24.37 -169.99 -4.14 18.46 16 13 H -0.28 -7.02 6.87 56.52 0.39 -6.63 16 14 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 15 H -0.27 -6.48 6.53 56.52 0.37 -6.11 16 16 C 0.12 2.43 3.15 -26.73 -0.08 2.34 16 17 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 18 O -0.54 -10.34 8.78 -35.23 -0.31 -10.65 16 19 C -0.14 -2.27 4.56 -26.73 -0.12 -2.39 16 20 H 0.03 0.48 8.10 -51.93 -0.42 0.06 16 21 H 0.04 0.56 7.90 -51.93 -0.41 0.14 16 22 H 0.10 1.86 3.79 -51.93 -0.20 1.66 16 23 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.04 0.98 3.27 -51.93 -0.17 0.81 16 29 H 0.07 1.67 5.95 -51.93 -0.31 1.36 16 30 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 31 H 0.35 5.03 8.82 45.56 0.40 5.43 16 32 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 242.92 15.07 3.66 3.66 Total: -1.00 -31.08 242.92 -5.01 -36.09 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -4.46 Total: 1.97 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -0.53 Total: -21.85 kcal Atomic # 7 Polarization: -28.45 SS G_CDS: 0.77 Total: -27.67 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.31 Total: -10.65 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.14 Total: 18.46 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.08 -5.01 -36.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.903 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds