Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47184 * 2 1 4 4 C 1.53002 * 109.47214 * 119.99869 * 2 1 3 5 5 C 1.52998 * 109.46839 * 60.00371 * 4 2 1 6 6 C 1.53001 * 109.47429 * 60.00301 * 5 4 2 7 7 H 1.08992 * 109.47222 * 59.99685 * 6 5 4 8 8 C 1.50695 * 109.47014 * 180.02562 * 6 5 4 9 9 H 1.08007 * 120.00106 * 119.99809 * 8 6 5 10 10 C 1.37876 * 119.99997 * 299.99390 * 8 6 5 11 11 N 1.31512 * 120.00309 * 180.02562 * 10 8 6 12 12 Si 1.86803 * 120.00050 * 0.02562 * 10 8 6 13 13 H 1.48499 * 109.47027 * 89.99846 * 12 10 8 14 14 H 1.48496 * 109.47314 * 209.99908 * 12 10 8 15 15 H 1.48497 * 109.46851 * 330.00145 * 12 10 8 16 16 C 1.53002 * 109.46864 * 299.99684 * 6 5 4 17 17 H 1.09002 * 109.47413 * 179.97438 * 16 6 5 18 18 O 1.42905 * 109.47357 * 300.00517 * 16 6 5 19 19 C 1.53003 * 109.47439 * 240.00205 * 2 1 3 20 20 H 1.08995 * 109.47118 * 311.16242 * 1 2 3 21 21 H 1.09001 * 109.47165 * 71.16747 * 1 2 3 22 22 H 1.08998 * 109.46746 * 191.16099 * 1 2 3 23 23 H 1.08992 * 109.47069 * 180.02562 * 3 2 1 24 24 H 1.08995 * 109.46767 * 299.99893 * 3 2 1 25 25 H 1.09002 * 109.46702 * 60.00023 * 3 2 1 26 26 H 1.09002 * 109.47203 * 180.02562 * 4 2 1 27 27 H 1.08999 * 109.46952 * 300.00203 * 4 2 1 28 28 H 1.09004 * 109.46867 * 180.02562 * 5 4 2 29 29 H 1.09002 * 109.47168 * 299.99954 * 5 4 2 30 30 H 0.96999 * 120.00614 * 180.02562 * 11 10 8 31 31 H 0.96697 * 114.00229 * 180.02562 * 18 16 6 32 32 H 1.08995 * 109.47396 * 59.99565 * 19 2 1 33 33 H 1.09002 * 109.47196 * 179.97438 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1637 1.2492 6 6 2.0401 -2.8850 0.0000 7 1 3.1301 -2.8850 0.0000 8 6 1.5373 -4.3056 -0.0003 9 1 0.9164 -4.6585 -0.8105 10 6 1.8699 -5.1548 1.0337 11 7 1.4315 -6.3947 1.0333 12 14 2.9433 -4.5442 2.4354 13 1 2.0842 -3.9784 3.5064 14 1 3.7349 -5.6756 2.9817 15 1 3.8638 -3.4933 1.9322 16 6 1.5301 -2.1638 -1.2493 17 1 1.8938 -2.6773 -2.1393 18 8 0.1011 -2.1637 -1.2493 19 6 2.0401 -0.7212 -1.2493 20 1 -0.3633 0.6764 0.7736 21 1 -0.3633 0.3317 -0.9727 22 1 -0.3633 -1.0082 0.1989 23 1 3.1299 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8900 25 1 1.6766 1.9563 0.8900 26 1 3.1300 -0.7208 1.2495 27 1 1.6766 -0.2074 2.1392 28 1 1.8930 -2.6774 2.1394 29 1 0.4400 -2.1638 1.2492 30 1 1.6652 -6.9921 1.7609 31 1 -0.2923 -1.7224 -2.0145 32 1 1.6767 -0.2075 -2.1392 33 1 3.1301 -0.7208 -1.2495 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259644418.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = -87.266517 kcal Electronic energy + Delta-G solvation = -13874.238381 eV Core-core repulsion = 11705.386163 eV Total energy + Delta-G solvation = -2168.852218 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.81642 -36.37401 -35.45439 -33.24753 -30.75885 -28.64307 -27.89025 -24.97412 -23.61616 -21.36761 -19.65681 -18.73334 -17.37244 -17.00294 -15.86683 -15.61221 -15.13906 -14.79770 -14.46248 -14.01872 -13.87215 -13.64084 -12.92130 -12.81084 -12.59207 -12.39312 -12.32099 -12.02178 -11.72951 -11.66879 -11.42806 -11.07653 -11.06076 -10.77990 -10.42275 -9.97827 -8.25997 -6.26633 1.29803 1.33268 1.44600 2.33610 3.07957 3.71254 3.85768 3.98772 4.04931 4.43955 4.48033 4.53552 4.62114 4.75325 4.85753 4.91787 4.98446 5.00803 5.08651 5.13244 5.18510 5.24543 5.33289 5.44013 5.59593 5.61627 5.70379 5.84965 5.96757 6.36499 6.78740 7.23745 7.36804 8.91662 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.045734 B = 0.014020 C = 0.012054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.084948 B = 1996.656791 C = 2322.330994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.056 4.056 3 C -0.134 4.134 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.017 3.983 7 H 0.031 0.969 8 C -0.498 4.498 9 H 0.029 0.971 10 C 0.003 3.997 11 N -0.956 5.956 12 Si 0.951 3.049 13 H -0.273 1.273 14 H -0.301 1.301 15 H -0.244 1.244 16 C 0.125 3.875 17 H 0.033 0.967 18 O -0.559 6.559 19 C -0.132 4.132 20 H 0.042 0.958 21 H 0.059 0.941 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.024 0.976 29 H 0.057 0.943 30 H 0.262 0.738 31 H 0.373 0.627 32 H 0.082 0.918 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.857 16.504 -2.313 16.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.056 4.056 3 C -0.191 4.191 4 C -0.146 4.146 5 C -0.152 4.152 6 C -0.002 4.002 7 H 0.049 0.951 8 C -0.536 4.536 9 H 0.048 0.952 10 C -0.192 4.192 11 N -0.598 5.598 12 Si 0.779 3.221 13 H -0.200 1.200 14 H -0.229 1.229 15 H -0.168 1.168 16 C 0.066 3.934 17 H 0.051 0.949 18 O -0.365 6.365 19 C -0.170 4.170 20 H 0.061 0.939 21 H 0.078 0.922 22 H 0.090 0.910 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.221 0.779 32 H 0.101 0.899 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.959 16.039 -1.676 16.245 hybrid contribution 0.188 -0.449 0.214 0.532 sum 2.147 15.590 -1.462 15.805 Atomic orbital electron populations 1.22170 0.94260 1.02866 1.01045 1.20419 0.96372 0.95099 0.93738 1.21830 1.00863 0.94213 1.02171 1.21666 0.99949 0.94619 0.98398 1.21811 1.00921 0.95317 0.97155 1.19171 0.95243 0.92811 0.92973 0.95066 1.21307 1.29829 0.95683 1.06829 0.95242 1.25910 0.97504 0.94832 1.00989 1.70064 1.48334 1.07190 1.34210 0.85796 0.79394 0.77267 0.79642 1.19951 1.22897 1.16805 1.21548 0.80892 0.94251 0.96697 0.94907 1.86724 1.19762 1.81764 1.48264 1.22296 1.01080 0.95091 0.98499 0.93895 0.92160 0.91034 0.92620 0.91623 0.92420 0.92511 0.91828 0.95823 0.92484 0.92869 0.77945 0.89920 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 7.10 71.98 0.51 -3.56 16 2 C -0.06 -1.55 0.77 -52.18 -0.04 -1.59 16 3 C -0.13 -2.82 8.45 71.98 0.61 -2.21 16 4 C -0.11 -3.60 4.73 30.59 0.14 -3.45 16 5 C -0.11 -4.97 4.35 30.59 0.13 -4.83 16 6 C 0.02 0.79 1.53 -11.54 -0.02 0.77 16 7 H 0.03 1.48 7.20 -2.39 -0.02 1.46 16 8 C -0.50 -29.55 8.81 25.60 0.23 -29.33 16 9 H 0.03 1.96 7.94 -2.91 -0.02 1.93 16 10 C 0.00 0.19 5.45 84.65 0.46 0.65 16 11 N -0.96 -62.45 13.96 21.45 0.30 -62.15 16 12 Si 0.95 47.15 24.37 68.60 1.67 48.82 16 13 H -0.27 -13.10 6.87 99.48 0.68 -12.42 16 14 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 15 H -0.24 -11.07 6.53 99.48 0.65 -10.42 16 16 C 0.12 4.77 3.15 30.60 0.10 4.86 16 17 H 0.03 1.29 8.14 -2.39 -0.02 1.28 16 18 O -0.56 -21.09 8.78 -148.98 -1.31 -22.40 16 19 C -0.13 -3.75 4.56 30.60 0.14 -3.61 16 20 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 21 H 0.06 1.41 7.90 -2.39 -0.02 1.39 16 22 H 0.07 2.48 3.79 -2.39 -0.01 2.48 16 23 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.02 1.09 3.27 -2.38 -0.01 1.08 16 29 H 0.06 2.62 5.95 -2.39 -0.01 2.61 16 30 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 31 H 0.37 10.09 8.82 -74.06 -0.65 9.43 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -69.39 242.92 3.28 -66.11 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.35 Total: 11.93 kcal Atomic # 6 Polarization: -44.57 SS G_CDS: 2.26 Total: -42.31 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.30 Total: -62.15 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -1.31 Total: -22.40 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.67 Total: 48.82 kcal Total: -69.39 3.28 -66.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644418.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.158 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds