Wall clock time and date at job start Mon Mar 30 2020 02:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47063 * 2 1 4 4 H 1.09007 * 109.48274 * 54.97848 * 3 2 1 5 5 O 1.42907 * 109.49379 * 294.94805 * 3 2 1 6 6 C 1.42904 * 114.09883 * 178.85578 * 5 3 2 7 7 C 1.53087 * 109.41618 * 61.15731 * 6 5 3 8 8 C 1.53187 * 109.16391 * 302.38896 * 7 6 5 9 9 C 1.53095 * 109.48069 * 174.99826 * 3 2 1 10 10 H 1.09002 * 109.52170 * 297.51156 * 9 3 2 11 11 C 1.53005 * 109.52022 * 57.63627 * 9 3 2 12 12 C 1.50696 * 109.47066 * 184.87661 * 11 9 3 13 13 H 1.08000 * 120.00337 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99924 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46936 * 89.99890 * 16 14 12 18 18 H 1.48501 * 109.47093 * 209.99681 * 16 14 12 19 19 H 1.48498 * 109.47243 * 329.99701 * 16 14 12 20 20 H 1.09008 * 109.47145 * 59.99820 * 1 2 3 21 21 H 1.08994 * 109.46983 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47313 * 299.99954 * 1 2 3 23 23 H 1.09004 * 109.46957 * 240.00178 * 2 1 3 24 24 H 1.08997 * 109.46651 * 120.00236 * 2 1 3 25 25 H 1.08993 * 109.48077 * 181.14314 * 6 5 3 26 26 H 1.09001 * 109.47735 * 301.16309 * 6 5 3 27 27 H 1.09000 * 109.52365 * 62.29593 * 7 6 5 28 28 H 1.09000 * 109.52109 * 182.48809 * 7 6 5 29 29 H 1.08998 * 109.54377 * 297.11563 * 8 7 6 30 30 H 1.09001 * 109.54098 * 176.84830 * 8 7 6 31 31 H 1.08998 * 109.47048 * 304.87764 * 11 9 3 32 32 H 1.09002 * 109.46942 * 64.87739 * 11 9 3 33 33 H 0.97003 * 120.00149 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9818 0.8416 5 8 1.6632 2.0814 -1.2214 6 6 2.0700 3.4482 -1.3146 7 6 3.5969 3.5308 -1.2416 8 6 4.0734 2.8885 0.0649 9 6 3.5658 1.4445 0.1258 10 1 3.8534 0.9971 1.0773 11 6 4.1746 0.6382 -1.0232 12 6 5.6663 0.5399 -0.8327 13 1 6.1334 1.0063 0.0221 14 6 6.4348 -0.1445 -1.7502 15 7 5.8661 -0.7119 -2.7914 16 14 8.2840 -0.2657 -1.5144 17 1 8.6028 -1.4765 -0.7161 18 1 8.9470 -0.3580 -2.8400 19 1 8.7721 0.9412 -0.7999 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.7283 3.8654 -2.2617 26 1 1.6354 4.0137 -0.4903 27 1 4.0314 2.9995 -2.0883 28 1 3.9068 4.5755 -1.2680 29 1 3.6791 3.4496 0.9121 30 1 5.1629 2.8937 0.0976 31 1 3.7429 -0.3626 -1.0334 32 1 3.9611 1.1357 -1.9692 33 1 6.4068 -1.1938 -3.4368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259651573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:06 Heat of formation + Delta-G solvation = -77.433818 kcal Electronic energy + Delta-G solvation = -13445.873970 eV Core-core repulsion = 11277.448130 eV Total energy + Delta-G solvation = -2168.425840 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.14272 -34.12981 -33.50395 -32.17509 -29.79655 -26.89449 -24.82356 -23.24438 -22.10341 -20.73231 -18.16281 -16.36152 -15.66403 -15.26134 -14.46185 -14.24567 -13.87601 -13.29762 -12.82708 -12.80829 -12.14708 -11.90443 -11.39502 -11.28394 -11.06952 -10.78110 -10.67315 -10.51262 -10.33335 -10.17155 -9.84592 -9.46501 -9.27473 -8.83425 -8.48437 -8.24249 -5.92891 -3.94030 3.33887 3.40510 3.43093 4.38872 4.50878 5.30158 5.42364 5.51773 5.56775 5.63166 5.66478 5.74193 5.82225 6.00043 6.03963 6.17241 6.25141 6.32620 6.43216 6.59033 6.68359 6.76537 6.81107 6.90897 7.03640 7.28884 7.79603 7.88232 7.98317 8.12340 8.51662 9.13044 9.68506 11.18029 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.010997 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.554454 B = 2545.505843 C = 2893.765515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.098 3.902 4 H 0.038 0.962 5 O -0.375 6.375 6 C 0.067 3.933 7 C -0.155 4.155 8 C -0.105 4.105 9 C -0.114 4.114 10 H 0.062 0.938 11 C 0.032 3.968 12 C -0.515 4.515 13 H 0.053 0.947 14 C 0.057 3.943 15 N -0.894 5.894 16 Si 0.886 3.114 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 H 0.058 0.942 21 H 0.048 0.952 22 H 0.044 0.956 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.019 0.981 32 H 0.026 0.974 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.303 5.521 4.769 10.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.040 3.960 4 H 0.056 0.944 5 O -0.295 6.295 6 C -0.010 4.010 7 C -0.193 4.193 8 C -0.143 4.143 9 C -0.133 4.133 10 H 0.080 0.920 11 C -0.005 4.005 12 C -0.553 4.553 13 H 0.071 0.929 14 C -0.144 4.144 15 N -0.534 5.534 16 Si 0.714 3.286 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 H 0.077 0.923 21 H 0.067 0.933 22 H 0.063 0.937 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -7.366 5.323 4.467 10.126 hybrid contribution 1.329 0.076 0.291 1.363 sum -6.036 5.399 4.757 9.393 Atomic orbital electron populations 1.21730 0.96420 1.00763 1.01458 1.21581 0.95111 0.95340 1.03472 1.22162 0.95123 0.93017 0.85665 0.94373 1.87876 1.78229 1.24159 1.39188 1.22431 0.94605 0.83562 1.00407 1.22173 0.96134 1.00154 1.00794 1.21483 1.01913 0.95586 0.95275 1.21856 0.93144 0.96343 1.01960 0.91980 1.19139 0.94352 0.94481 0.92491 1.21287 0.92843 1.32995 1.08200 0.92925 1.24995 0.98149 0.95860 0.95398 1.69972 1.35282 1.35610 1.12510 0.86695 0.86242 0.78333 0.77318 1.20809 1.21337 1.20028 0.92288 0.93328 0.93722 0.89910 0.91146 0.89959 0.94595 0.89621 0.92518 0.94422 0.90762 0.96303 0.95550 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.81 37.16 0.36 -1.77 16 2 C -0.12 -2.06 5.07 -26.73 -0.14 -2.20 16 3 C 0.10 1.81 2.33 -26.69 -0.06 1.75 16 4 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 5 O -0.38 -7.27 9.46 -35.23 -0.33 -7.60 16 6 C 0.07 1.11 6.84 37.20 0.25 1.36 16 7 C -0.15 -2.79 5.78 -26.59 -0.15 -2.94 16 8 C -0.11 -2.01 5.38 -26.54 -0.14 -2.15 16 9 C -0.11 -2.39 2.19 -90.48 -0.20 -2.59 16 10 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 11 C 0.03 0.83 3.83 -27.88 -0.11 0.72 16 12 C -0.51 -14.43 8.37 -34.44 -0.29 -14.72 16 13 H 0.05 1.44 7.08 -52.49 -0.37 1.07 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -27.07 13.29 55.43 0.74 -26.34 16 16 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H 0.06 0.90 7.83 -51.92 -0.41 0.49 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.08 1.66 6.57 -51.93 -0.34 1.32 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.09 1.81 6.52 -51.93 -0.34 1.47 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.54 6.90 -51.93 -0.36 1.18 16 31 H 0.02 0.52 6.24 -51.93 -0.32 0.19 16 32 H 0.03 0.74 6.05 -51.93 -0.31 0.42 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 257.45 15.07 3.88 3.88 Total: -1.00 -29.94 257.45 -6.70 -36.63 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -5.39 Total: -2.35 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -0.57 Total: -21.01 kcal Atomic # 7 Polarization: -27.07 SS G_CDS: 0.74 Total: -26.34 kcal Atomic # 8 Polarization: -7.27 SS G_CDS: -0.33 Total: -7.60 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -29.94 -6.70 -36.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.799 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds