Wall clock time and date at job start Mon Mar 30 2020 02:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52992 * 109.47063 * 2 1 4 4 H 1.09007 * 109.48274 * 54.97848 * 3 2 1 5 5 O 1.42907 * 109.49379 * 294.94805 * 3 2 1 6 6 C 1.42904 * 114.09883 * 178.85578 * 5 3 2 7 7 C 1.53087 * 109.41618 * 61.15731 * 6 5 3 8 8 C 1.53187 * 109.16391 * 302.38896 * 7 6 5 9 9 C 1.53095 * 109.48069 * 174.99826 * 3 2 1 10 10 H 1.09002 * 109.52170 * 297.51156 * 9 3 2 11 11 C 1.53005 * 109.52022 * 57.63627 * 9 3 2 12 12 C 1.50696 * 109.47066 * 184.87661 * 11 9 3 13 13 H 1.08000 * 120.00337 * 359.97438 * 12 11 9 14 14 C 1.37877 * 119.99924 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86809 * 119.99833 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.46936 * 89.99890 * 16 14 12 18 18 H 1.48501 * 109.47093 * 209.99681 * 16 14 12 19 19 H 1.48498 * 109.47243 * 329.99701 * 16 14 12 20 20 H 1.09008 * 109.47145 * 59.99820 * 1 2 3 21 21 H 1.08994 * 109.46983 * 179.97438 * 1 2 3 22 22 H 1.08991 * 109.47313 * 299.99954 * 1 2 3 23 23 H 1.09004 * 109.46957 * 240.00178 * 2 1 3 24 24 H 1.08997 * 109.46651 * 120.00236 * 2 1 3 25 25 H 1.08993 * 109.48077 * 181.14314 * 6 5 3 26 26 H 1.09001 * 109.47735 * 301.16309 * 6 5 3 27 27 H 1.09000 * 109.52365 * 62.29593 * 7 6 5 28 28 H 1.09000 * 109.52109 * 182.48809 * 7 6 5 29 29 H 1.08998 * 109.54377 * 297.11563 * 8 7 6 30 30 H 1.09001 * 109.54098 * 176.84830 * 8 7 6 31 31 H 1.08998 * 109.47048 * 304.87764 * 11 9 3 32 32 H 1.09002 * 109.46942 * 64.87739 * 11 9 3 33 33 H 0.97003 * 120.00149 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6052 1.9818 0.8416 5 8 1.6632 2.0814 -1.2214 6 6 2.0700 3.4482 -1.3146 7 6 3.5969 3.5308 -1.2416 8 6 4.0734 2.8885 0.0649 9 6 3.5658 1.4445 0.1258 10 1 3.8534 0.9971 1.0773 11 6 4.1746 0.6382 -1.0232 12 6 5.6663 0.5399 -0.8327 13 1 6.1334 1.0063 0.0221 14 6 6.4348 -0.1445 -1.7502 15 7 5.8661 -0.7119 -2.7914 16 14 8.2840 -0.2657 -1.5144 17 1 8.6028 -1.4765 -0.7161 18 1 8.9470 -0.3580 -2.8400 19 1 8.7721 0.9412 -0.7999 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.7283 3.8654 -2.2617 26 1 1.6354 4.0137 -0.4903 27 1 4.0314 2.9995 -2.0883 28 1 3.9068 4.5755 -1.2680 29 1 3.6791 3.4496 0.9121 30 1 5.1629 2.8937 0.0976 31 1 3.7429 -0.3626 -1.0334 32 1 3.9611 1.1357 -1.9692 33 1 6.4068 -1.1938 -3.4368 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259651573.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:06 Heat of formation + Delta-G solvation = -95.502012 kcal Electronic energy + Delta-G solvation = -13446.657466 eV Core-core repulsion = 11277.448130 eV Total energy + Delta-G solvation = -2169.209336 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 198.136 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.64508 -35.91928 -34.87377 -34.15773 -31.34062 -28.80454 -26.24058 -25.08591 -23.74945 -22.12960 -19.80360 -18.44549 -17.14115 -16.83144 -16.43707 -15.76019 -15.46442 -14.67142 -14.45113 -14.16379 -13.89916 -13.68362 -13.08051 -12.98011 -12.66140 -12.45586 -12.32825 -12.21598 -11.87990 -11.64646 -11.48492 -11.22631 -11.12587 -10.61619 -10.46913 -10.03628 -8.14661 -6.23657 1.38031 1.38966 1.49542 2.41665 3.02771 3.18058 3.90478 4.08209 4.16163 4.19334 4.29288 4.41529 4.50234 4.63120 4.66878 4.79186 4.91064 4.95913 5.08801 5.14588 5.19102 5.24221 5.34281 5.41474 5.51851 5.52711 5.68560 5.87351 5.97733 6.32403 6.52323 6.94147 7.43674 8.96819 Molecular weight = 198.14amu Principal moments of inertia in cm(-1) A = 0.039396 B = 0.010997 C = 0.009674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.554454 B = 2545.505843 C = 2893.765515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.101 3.899 4 H 0.070 0.930 5 O -0.398 6.398 6 C 0.063 3.937 7 C -0.153 4.153 8 C -0.104 4.104 9 C -0.114 4.114 10 H 0.062 0.938 11 C 0.044 3.956 12 C -0.528 4.528 13 H 0.057 0.943 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.264 1.264 20 H 0.049 0.951 21 H 0.061 0.939 22 H 0.067 0.933 23 H 0.043 0.957 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.051 0.949 31 H -0.011 1.011 32 H -0.006 1.006 33 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.633 6.864 6.376 12.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.157 4.157 3 C 0.043 3.957 4 H 0.088 0.912 5 O -0.318 6.318 6 C -0.013 4.013 7 C -0.190 4.190 8 C -0.142 4.142 9 C -0.133 4.133 10 H 0.080 0.920 11 C 0.007 3.993 12 C -0.566 4.566 13 H 0.075 0.925 14 C -0.199 4.199 15 N -0.575 5.575 16 Si 0.782 3.218 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.188 1.188 20 H 0.069 0.931 21 H 0.080 0.920 22 H 0.086 0.914 23 H 0.062 0.938 24 H 0.096 0.904 25 H 0.116 0.884 26 H 0.086 0.914 27 H 0.059 0.941 28 H 0.105 0.895 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.008 0.992 32 H 0.013 0.987 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.699 6.677 6.086 11.870 hybrid contribution 1.418 -0.334 -0.224 1.474 sum -6.281 6.343 5.862 10.679 Atomic orbital electron populations 1.21652 0.93790 1.01909 1.02097 1.21584 0.97443 0.94759 1.01948 1.22178 0.93138 0.93835 0.86504 0.91223 1.87862 1.78257 1.25844 1.39835 1.22644 0.93333 0.82638 1.02689 1.22135 0.97396 1.01124 0.98382 1.21465 1.00635 0.94793 0.97260 1.21788 0.95197 0.96824 0.99449 0.91954 1.18920 0.93704 0.93415 0.93249 1.21696 0.94199 1.32546 1.08164 0.92465 1.25916 1.03369 0.95538 0.95066 1.70122 1.37241 1.36628 1.13558 0.85573 0.80005 0.78834 0.77399 1.19949 1.21069 1.18790 0.93144 0.92043 0.91434 0.93817 0.90363 0.88353 0.91370 0.94076 0.89519 0.90800 0.92994 0.99242 0.98746 0.93116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 9.81 71.98 0.71 -3.05 16 2 C -0.12 -4.17 5.07 30.59 0.16 -4.01 16 3 C 0.10 3.59 2.33 30.62 0.07 3.66 16 4 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 5 O -0.40 -15.03 9.46 -148.98 -1.41 -16.44 16 6 C 0.06 1.94 6.84 72.01 0.49 2.44 16 7 C -0.15 -5.32 5.78 30.69 0.18 -5.14 16 8 C -0.10 -3.83 5.38 30.72 0.17 -3.66 16 9 C -0.11 -4.73 2.19 -10.70 -0.02 -4.75 16 10 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 11 C 0.04 2.36 3.83 29.85 0.11 2.47 16 12 C -0.53 -30.29 8.37 25.60 0.21 -30.07 16 13 H 0.06 3.15 7.08 -2.91 -0.02 3.13 16 14 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 15 N -0.93 -58.48 13.29 21.45 0.28 -58.19 16 16 Si 0.96 45.22 29.54 68.60 2.03 47.25 16 17 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 20 H 0.05 1.46 7.83 -2.38 -0.02 1.44 16 21 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 22 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.04 1.84 6.57 -2.39 -0.02 1.82 16 24 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.10 2.67 8.14 -2.39 -0.02 2.66 16 26 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 27 H 0.04 1.79 6.52 -2.39 -0.02 1.77 16 28 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 29 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.05 2.11 6.90 -2.39 -0.02 2.10 16 31 H -0.01 -0.63 6.24 -2.39 -0.01 -0.64 16 32 H -0.01 -0.34 6.05 -2.39 -0.01 -0.36 16 33 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -66.28 257.45 4.50 -61.78 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: 1.06 Total: 7.37 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 2.54 Total: -41.76 kcal Atomic # 7 Polarization: -58.48 SS G_CDS: 0.28 Total: -58.19 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.41 Total: -16.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -66.28 4.50 -61.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259651573.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.719 kcal (2) G-P(sol) polarization free energy of solvation -66.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds